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I want to import the gene ontology and the human phenotype ontology. Both give me some issues.
```python
from nxontology.imports import from_file
gene_ontology = from_file("http://purl.obolibra…
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Hey there,
thank you very much for already fixing the isolated roots and leaves issue for ontologies given as owl files, which took me some time on my own.
However, I have another issue with your …
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https://github.com/NCATSTranslator/minihackathons/blob/main/2021-12_demo/workflowD/D.6_metformin-ferritin.json
From workflow B, we're returning data in two-hop queries that walks up the 'parent…
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I can't find macrolide in mychem, and I wonder if it indicates that our ChEBI import is somehow incomplete? Details below (using imatinib as a positive control):
ChEBI records
* imatinib: https:/…
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Some of these guidelines are general and apply to any bio-KG but I have tried to tailor for the covid-19 KG
## Guidelines
- We should **always use the official PURLs** for download (see the ont…
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We need a relation 'has exemplar' with a particular use for the cell ontology (and the brain data standards ontology) to link a cell type to a cluster from sc transcriptomics. The general pattern may…
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these will be fed to obographviz for visualization
add an axiom annotation using `` to indicate probability, prob * 10, e.g. for Pr(E)=0.7, do:
```
{
"sub": "GO:123",
"pred": "owl…
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Hi Frank,
I have a problem testing the docker based deployment as described in the docker directory (deployment section of the repository). Starting up the deployment using docker-compose up works …
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Fixing these will help address #834
Adding Shahim, as I am not sure if I know how to filter all the terms that are tagged 'obsoletion candidate'
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I am using the go-basic.obo file. When I do `len(go.values())`, I get 47245. Note that the GO terms below are for BP, CC, AND MF. When I do `len(go["GO:0003674"].get_all_children()) + len(go["GO:00055…
mdanb updated
3 years ago