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hi, I have an error when I run the optitype software.
I have installed the optitype software by the command line: conda create -n optitype; conda install -n optitype -c bioconda optitype. And it work…
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Hi,
i have some WES data, and using HLA-HD i get HLA-typing result.
but on some data all alleles is "Not typed"
so i run per lines on hlahd.sh.
and i have realized fastq of stfr output is emp…
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### Description of bug
Using multiQC in my nextflow pipeline (https://github.com/DSchreyer/circdna) caused all modules to break when using -profile conda. I repeated the run with -profile docker and …
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I am a student who started my internship at graduate school and is building a new server.
I'm going to install bcbio according to the link recommended by the professor, but I run into the same prob…
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Hi
The latest version of samtools 1.10 can't be installed not even in freshly setup conda environements.
Tried with python 3.6.8 and python 3.7.1.
Both installations fail caused by conflicts:…
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**Version info**
Version: 1.2.7 (or latest version per bcbio_nextgen_install.py)
OS name:/version: CentOS Linux release 7.8.2003 (Core)
OS environment: HPC cluster
**To Reproduce**
wget command…
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Hello,
I'm running into an error with OptiType. I'm pasting the lines from the R.optitype.log file below:
0:00:01.97 Generating binary hit matrix.
Traceback (most recent call last):
File "/u…
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Hi,
I was wondering if you could please help. Have attempted to install and run Optitype as per the guidance. Unfortunately this error is generated:
python /Users/markg14/software/OptiType-maste…
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https://github.com/genome/analysis-workflows/blob/a3e26136043c03192c38c335316d2d36e3e67478/definitions/pipelines/immuno.cwl#L731
The immuno workflow should be modified to allow the user to optional…
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Any plans on implementing tools that can perform class II typing as well?