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It is said in the doc that "For each subject, we preliminary extracted signals using different brain parcellations and atlases and accounting for motion correction and confounds." but while going thro…
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Hi,
I used on OSX `pysurfer=0.11.dev0` with `python=3.6.10` and tried to display on Desikan parcellation values, containing both negative and positives values, using the following code:
```
coe…
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the ones behind https://brainlife.io/apps to go under https://github.com/ReproNim/containers/tree/master/images/abcd
- figure out where API endpoint for listing them is (@soichih?)
- while adding…
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Hi there, I get the following error when attempting to run the first step in the WMA pipeline (https://whitematteranalysis.readthedocs.io/en/latest/subject-specific-tractography-parcellation.html). I …
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Good afternoon,
I'm very interested in being able to use this template/atlas in some of my research. I've been using ANTs to do the registration between my images and your template and generate con…
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Dear MCRIBS developers,
thank you for providing this great tool!
I am using MCRIBReconAll inside a docker container on a Linux machine (Ubuntu 18.04.6 LTS) as it has no Internet connection. When …
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I am trying to obtain sample-level expression data for each of 8 components (~parcels) from a data-driven cortical decomposition performed in CIVET space. I have both a LH/RH binary mask per component…
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It would be great to create a "query atlas tool" that would give the user information in which atlas structure each contact falls – and that across all atlases available.
The code would need to run th…
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Hi,
In one of the dMRI workflows I noticed the following set of lines:
https://github.com/nipy/nipype/blob/732cef3f0259fec92f9dd15205c7c209e2606499/nipype/workflows/dmri/mrtrix/group_connectivity.py…