-
Hello Alessio,
Since few months now, I use the ring plugin to characterize some antibody_protein dynamics.
Also, you sent to me the bin for ring and we use it on our linux station. (With 5000 fram…
-
Hello, the ENCODE project has another NTR request for an assay that we will need to annotate a number of experiments.
**editor preferred term:** Split-pool recognition of interactions by tag extens…
-
**Describe the bug**
I am trying to run CellChat and I am getting a AttributeError: 'SparseCSRView' object has no attribute 'A'.
**To Reproduce**
Here is the code to call the method. The "adata…
-
I'm getting the following error when running binana from a Python script with a set of proteins and ligands in .pdb format (extracted directly from the PDB). It starts fine but fails when getting to a…
-
Currently, glyphs in SBOLDesign 3.0 are black and white. It's helpful to communicate differences, relationships, etc. using color. For example, it would be useful to color the interior of the CDS glyp…
-
When I installed BioMedR through CRAN, got the error message for some dependencies like "fmcsR", "ChemmineR", "GoSemSim".
> ERROR: dependency '"fmcsR", "ChemmineR", "GoSemSim"' is not available fo…
-
Hi,
I'm using Graphein on Google Colab, I have a list of PDB ids `pdb_ids` and I'm using `ProteinGraphDataset(...)` to create a dataset.
```
!pip install graphein[extras] torch-geometric
```
```
…
-
### [Transcription factors](https://www.youtube.com/watch?v=Sd3imcsvXxI)
1. Transcription factor (proteins) control the expression of genes by regulating the process of gene transcription.
![gene-…
-
https://jcheminf.springeropen.com/articles/10.1186/s13321-015-0110-6
_Edit:_
https://doi.org/10.1186/s13321-015-0110-6
>**Background**
A number of algorithms have been proposed to predict the …
-
Hi there,
is it actually possible to only accelerate a part of the ligand? I have a relatively long ligand buried in a kind of tunnel in the protein. It looks like, that a polar interaction on on…