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Hello,
I encountered an error while running the code provided below. Could you please advise on how to resolve this issue?
mol = Molecule('2LEB')
#mol.filter("protein")
#mol.set('segid', 'A', …
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Hi,
I noticed that if a PDB file has a few missing atoms and then one uses --rpr function to get the file ready for rna-puzzles then the resultant PDB file has significant differences from the origin…
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## Initial Request
### Goal
_Describe what you're trying to accomplish. This is the only necessary step to start this process. The Committee is available to assist with all other steps. Please cle…
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### Data Owner Name
Protein Data Bank 3D Structural Biology Data
### What is your role related to the dataset
Storage provider filling out application on behalf of the data owner
### Data …
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I generated the LIG.rtf file and LIg.prm files for ligand using charmm-gui (https://charmm-gui.org/?doc=input/ligandrm).
I encounter the following errors while System building for RNA-ligand.
``…
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Hi,
I have been tryimg to setup the rna-tools on my system. I have installed it using pip, but I cannot run the rna_pdb_tools.py command on terminal. I am always getting, rna_pdb_tools.py: command no…
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@michalhammel and I have this idea to use the pLDDT values (AF2 [FAQ](https://alphafold.ebi.ac.uk/faq)) from an AlphaFold model to automagically define Rigid Domains in a protein. This a cool idea, b…
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I've had an initial go at adding support for import oxDNA topology / trajectory files to into Blender using Molecular Nodes ([PR](https://github.com/BradyAJohnston/MolecularNodes/pull/346)). There isn…
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**Agenda Open-Source COVID helicase, nsp13, Mon 12th June 2023:**
Date: Monday 12th June 2023.
Time: 5pm BST ([other times](https://www.timeanddate.com/worldclock/meetingtime.html?iso=20230109&p1=…
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See https://github.com/JuliaGraphs/LightGraphs.jl/blob/master/CONTRIBUTING.md - this is rendering as http://juliagraphs.github.io/LightGraphs.jl/latest/contributing/ - and if you scroll down to the "D…