-
Good morning 😊
I am opening this issue on the recommendation of @rob-p and our discussion over on BioStar (https://www.biostars.org/p/486346/#486637).
I was using STAR to index and align my raw r…
-
I am not sure where in the braker pipeline this issue is relevant, but perhaps helpful to post it here.
I have noticed that the 5' Met start is often not predicted at the most 5' possible Met. I atta…
-
**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.1.5
**To Reproduce**
Exact bcbio command you have used:
```
bcbio_nextgen.py {CONFIG_YAML} -t ipython -n 41 -s sge -q main.r…
-
6th FEB 2020 | no. SRX
-- | --
Arabidopsis thaliana | 30890
Zea mays | 19753
Oryza sativa | 9737
Triticum aestivum | 6924
Solanum lycopersicum | 6444
Sorghum bicolor | 4646
Glycine max | 3…
-
## Description of the bug
I get a permission error when running the nf-core download command through Docker with the -u option to set the user & group IDs (as described in the docs https://nf-co.re…
-
Been having trouble creating a toil-box, tried this with toil-box ,toil-latest-box and toil-legacy-box get the same error. However i had no problems creating a generic-ubuntu-trusty-box so it seems sp…
-
Dear @alekseyzimin,
I wonder if you have ever considered including within the masurca pipeline any software for the RNA scaffolding of the assembly generated. Sometimes, people assembling a genome wi…
-
## Bug report
### Expected behavior and actual behavior
Nextflow sometimes exits when running the nf-core rnaseq workflow against AWS Batch with the following error:
```
CgroupError: Agent …
-
Apparently, it would be possible to fetch our metadata and submit a registration of new pipelines / update our existing pipelines and make them listed at bio.tools:
https://biotools.readthedocs.io/…
-
Hi,
I have a single end reads and I would like to use this powerful pipeline to process my samples. Which command can I use to process this type of data since I can see the pipeline only accepts pa…