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### What happened?
I tried both on the command line as well as within a python notebook and I get this error:
In python,
```python
import gget
gget.setup("gpt")
```
returns the following er…
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https://github.com/scverse/scanpy/blob/2e98705347ea484c36caa9ba10de1987b09081bf/scanpy/plotting/_tools/__init__.py#L1151-L1156
For reference, `sc.pl.rank_genes_groups` assigns "_gene_names" as such…
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When rasterizing images or labels (basically resampling), there is an offset (see picture) that I think is due to the fact that somewhere in the code for rasterization the coordinates of the pixels ar…
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Hi @adamgayoso and others (also cc @fritzo, @martinjankowiak @eb8680)
It would be great if the new `torch.compile` function could be used with the Pyro model and guide in scvi-tools.
I am happy…
vitkl updated
4 months ago
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Given our quest to support >1M cells (#370), we should add a tutorial that covers scalability topics, for instance
* GPU support (functions implemented by @felixpetschko)
* out-of-machine comput…
grst updated
3 months ago
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Its related to this:
- https://github.com/vispy/vispy/issues/2078
- https://github.com/scverse/napari-spatialdata/issues/35
One solution could be to replace the particle layers with a shape lay…
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
10X updated to Space Ranger v3.0, and …
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Due to several insidious bugs in napari and napari-spatialdata concerning the radii of points in the macOS platform (we have to use points instead of the more intuitive shapes because of performance r…
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As our team grows, we want to update our governance model to accomodate both developer and community roles in the core team.
## TODOs
- [ ] @ivirshup: send around examples of other governance syste…
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Hey,
we moved from conda-forge to Bioconda -> https://github.com/scverse/scanpy/issues/1169
Unfortunately, this comes at a cost which is highly relevant for pipeline building. nf-core wants to a…