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Hi Quentin
I haven't managed to find any information about how IGoR handles allelic variants presented in models. In default models some IGHV, TRAV and TRBV genes have several alleles (up to 7) and…
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Hello,
Can you apply this software to pigs?
Lv Jiayu
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Rtree is a ctypes Python wrapper of libspatialindex that provides a number of advanced spatial indexing features for the spatially curious Python user. These features include:
Nearest neighbor sear…
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I noticed that about 5% of BA.2 have some weird deletions at the beginning of ORF1a, at least around 20 amino acids, but up to 100 in some.
When I pulled 3 random sequence names and queried the seq…
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Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…
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Hello, I'm glad to see that this repository has provided the annotated results table for the second version of tuberculosis drug resistance, which is highly relevant to our current work. Our research …
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Would it be a good idea to add BA.2.9
As of (today) has 349851 total sequences so far and in many countries.
I believe European Centre for Disease Prevention and Control labels it as a **Varian…
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Dear Heng,
We had the pleasure of [discussing](http://mlin.github.io/20140411-dxjc-wgs-variant-calling/) your important [preprint](http://arxiv.org/abs/1404.0929) at our journal club last week. Here'…
mlin updated
10 years ago
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I use strelka2(v2.9) with default parameters (added --exome) to detect variants in panels, there are many variants with low allele frequencies(0.2 were detected, but variants with lower freq are misse…
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## Description
Building on the work in issue #22, output the number of cases per day, deme, and variant to support models like @marlinfiggins's Rt frequency dynamics models.
Example output looks…