-
Hi @andreyshabalin,
Thank you for an amazing resource!
I am troubleshooting what I think is an environment-related issue when running Matrix_eQTL_Main(). In one environment (generic set of R lib…
-
#### What data file(s) does this issue pertain to?
bixops file - perhaps there is a more recent one than `20230203_release_histologies_ops_update.csv` which includes these samples - if so, please sen…
-
Hi - thank you for all the work on this package!
I seme to be running into some issue related to memory during plotting:
```
INFO [2023-05-14 11:21:44] Observation data size: Cells= 21201 Genes…
-
## Need
Two recent issues have been lifted with regards to filtering of SVs:
1. **Filter TIDDIT:** In version 10.0.0 of balsamic TIDDIT and Delly were introduced into the pipeline as additional va…
-
https://mp.weixin.qq.com/s/FSAM-h3D1vo5qhFenqDwrg
ixxmu updated
8 months ago
-
**Describe the bug**
Looking at WGS tumor / normal case "notedshark", SV calls are disappearing during the "vep_somatic_sv" rule.
The number of variants in the vcf-files before and after is diffe…
-
貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
-
Related to this issue https://github.com/Clinical-Genomics/BALSAMIC/issues/882
Currently, the headers in the bam file are renamed as `TUMOR` and `NORMAL`, where the output VCFs generated downstream…
-
### Describe the bug
Sequencing Information is incomplete for some files to be submitted in the second CDS release.
There are 8756 unique sequencing experiments associated with files being subm…
-
## Balsamic features for the next release:
> Balsamic v11/v12 discussion
> - [ ] Filtering strategy prior to upload to Scout
> - [ ] ENCODE Blacklist regions
> - [ ] Merge TNhaploty…