andreyshabalin MatrixEQTL issues

andreyshabalin / MatrixEQTL

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

53 stars 16 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

significant p value

#31 sumageb closed 1 month ago
4
pvOutputThreshold

#30 JXAUDZF opened 3 months ago
1
Wrong number of samples in the matrix of covariates

#29 JXAUDZF opened 3 months ago
1
p-values very small

#28 winnerHeyc opened 5 months ago
1
Why are the FDR and P-value values the same for many SNP loci?

#27 chenchen-eng opened 8 months ago
1
Preventing imputation of missing snps?

#26 julianalbers closed 10 months ago
4
Is this P-value comparable to that of GWAS analysis?

#25 lizhao007 closed 9 months ago
2
Excluding NA instead of imputing

#24 nienkevanunen closed 10 months ago
5
Understanding "Colinear or zero covariates detected" error message

#23 RegnerM2015 closed 12 months ago
7
calculation only cis-eQTL

#22 Asppagh closed 1 year ago
2
how to add kinship matrix

#21 zhoudreames closed 1 year ago
3
Significant trans eQTLs are no longer significant when cis window increases

#20 katec04 closed 1 year ago
2
Your thoughts on some unusual cross-tissue results - possibly due to dummy covariates?

#19 danphillips28 closed 1 year ago
1
Error in findInterval

#18 ipiras closed 2 years ago
2
Why pvOutputThreshold affect p value?

#17 xiekunwhy closed 2 years ago
2
Non-parametric linear regression

#16 Yijun-Tian closed 2 years ago
7
Multiallelic variants

#15 Tijs-dot closed 3 years ago
3
Help understanding option 'noFDRsaveMemory' in Matrix eQTL

#14 sharvari14 closed 3 years ago
2
Categorical covariates with >2 groups?

#13 erbader closed 3 years ago
1
trans-QTL was defined as cis-QTL

#12 wdyyy closed 3 years ago
1
FDR: how is it calculated by the package?

#11 complexgenome closed 4 years ago
1
beta value of MatrixEQTL results

#10 Zhangj215 closed 4 years ago
2
Data set too large?

#9 katiearacena closed 4 years ago
2
`noFDRsaveMemory = TRUE` no longer works with `output_file_name.cis`

#8 sritchie73 closed 5 years ago
1
Matrix_eQTL_main() outputs error when `output_file_name` is not provided

#7 sritchie73 closed 5 years ago
1
'long vectors not supported yet' on larger dataset

#6 jmal0403 closed 5 years ago
5
Thousands of results are NA

#4 lcolladotor closed 6 years ago
10
`findInterval` error in certain workflows

#3 andrewejaffe closed 6 years ago
5
Order of Matrix eQTL output

#2 QinqinHuang closed 6 years ago
3
Long Vector Error when compiling results

#1 AndrewSkelton closed 7 years ago
9