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d3b-center
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d3b-cds-manifest-prep
scripts to prep manifests for cds
Apache License 2.0
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🏷 Release 1.0.1
#151
chris-s-friedman
closed
1 year ago
0
🐛 Fix sequencing file mappings
#150
chris-s-friedman
closed
1 year ago
0
🔧 make the checkout step for releases download and cache lfs files
#149
chris-s-friedman
closed
1 year ago
0
🏷 Release 1.0.0
#148
chris-s-friedman
closed
1 year ago
0
Prep v2 assets
#147
chris-s-friedman
closed
1 year ago
0
🍱 add updated sequencing file and excel output
#146
chris-s-friedman
closed
1 year ago
0
🐛 don't save index to excel files
#145
chris-s-friedman
closed
1 year ago
0
🐛get file gatherer working
#144
chris-s-friedman
closed
1 year ago
0
Sequencing file cache location
#143
chris-s-friedman
closed
1 year ago
0
🐛 get study_tables to have appropriate column values
#142
chris-s-friedman
closed
1 year ago
0
add sequencing_file and updates to study and study_admin, start work on excel_writer
#141
chris-s-friedman
closed
1 year ago
0
♻️ move cli options into a common function
#140
chris-s-friedman
closed
1 year ago
0
Sequencing file update
#139
chris-s-friedman
closed
1 year ago
0
✨ M1TEAM-64 V1.x prep
#138
chris-s-friedman
closed
1 year ago
0
🎨 remove breakpoint when building jhu manifest
#137
chris-s-friedman
closed
1 year ago
0
🐛 load the jhu sample manifest when creating the file-sample-participant map
#136
chris-s-friedman
closed
1 year ago
0
✨ M1TEAM-74 remove jhu samples from the x01 fsp
#135
chris-s-friedman
closed
1 year ago
0
Submission Package bug - Sequencing File Information is Missing
#134
chris-s-friedman
closed
1 year ago
1
🌱 Add file-sample-participant mapping for the CBTN X01
#133
chris-s-friedman
closed
1 year ago
3
Feature Request: CDS v1.x.x
#132
chris-s-friedman
opened
1 year ago
0
📝 add badges to readme
#131
chris-s-friedman
closed
1 year ago
0
📄 add license
#130
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.14.1
#129
chris-s-friedman
closed
1 year ago
0
🍱 updated sample manifest after redcap updates
#128
chris-s-friedman
closed
1 year ago
0
🔥Remove unused data files
#127
chris-s-friedman
closed
1 year ago
0
🐛Fix release script readme
#126
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.14.0
#125
chris-s-friedman
closed
1 year ago
0
🐛 Fix histologies file
#124
chris-s-friedman
closed
1 year ago
0
✅ add test for diagnosis_sample map file
#123
chris-s-friedman
closed
1 year ago
0
🐛 missing diagnoses and remove normal samples from bs_dx
#122
chris-s-friedman
closed
1 year ago
0
Submission Package bug - germline samples are in the diagnosis-sample map
#121
chris-s-friedman
closed
1 year ago
0
Submission Package bug - PT_95S99RWE not in diagnoses manifest
#120
chris-s-friedman
closed
1 year ago
2
🏷 Release 0.13.0
#119
chris-s-friedman
closed
1 year ago
0
✨New diagnosis ids
#118
chris-s-friedman
closed
1 year ago
0
✨ add qc of diagnoses
#117
chris-s-friedman
closed
1 year ago
0
♻️ move qc functions to submodules of qc
#116
chris-s-friedman
closed
1 year ago
1
Submission Package bug - Diagnoses should be at the event level, not the aliquot level
#115
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.12.0
#114
chris-s-friedman
closed
1 year ago
0
🍱 updated genomic_info table with correct bases and read counts
#113
chris-s-friedman
closed
1 year ago
0
🍱 updated nci submit from bix
#112
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.11.1
#111
chris-s-friedman
closed
1 year ago
0
🍱 remove not reported diagnoses from diagnosis manifest
#110
chris-s-friedman
closed
1 year ago
0
🚑️ remove duplicated entries from histologies
#109
chris-s-friedman
closed
1 year ago
0
🍱 update histologies file with manual diagnoses
#108
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.11.0
#107
chris-s-friedman
closed
1 year ago
0
🍱 updated histologies data
#106
chris-s-friedman
closed
1 year ago
0
✨Generate histologies file
#105
chris-s-friedman
closed
1 year ago
0
🔥 remove unused module for utils
#104
chris-s-friedman
closed
1 year ago
0
✨ sort values of all the output manifests
#103
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.10.1
#102
chris-s-friedman
closed
1 year ago
0
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