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### Error reported on screen:
Error in rule prep_pgs_sbayesr_i:
jobid: 23
input: UKB/output/reference/gwas_sumstat/BIP/BIP-cleaned.gz, resources/data/gctb_ref/ukbEURu_hm3_shrunk_sparse, res…
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Hi,
I want to know which covariates shoud be regressed here, such as fating time or spectrometer or some else?
`bio_qc
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Hi, I have a simple question about the example of loading the gene score information prior application:
```
# load adata
adata = sc.read_h5ad("data/expr.h5ad")
# subset gene sets
df_gs = pd.r…
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### Data Owner Name
Jiangsu Jubei Technology Co., Ltd
### What is your role related to the dataset
Dataset Owner
### Data Owner Country/Region
China
### Data Owner Industry
Arts & Recreation
### W…
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Hello Dr. Nicolazzi,
I'm trying to use your pipeline presently for some of our arrays that we just got. I have multiple issues but here's one of them in particular.
When I'm trying to run the "Best…
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### What is the problem?
There seems to be a documentation issue or a bug in `Dataset.status()`. The api has a `result_xfm` option `"metadata"`, but using that in a typical setting raises an exceptio…
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This looks like a wonderful and much-needed project! It would be tremendously helpful to have some guidance in the readme for how to make use of this, namely:
1. Any preprocessing steps that users …
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Hi,
I am running Predict.py with some bgen files. I actually have two issues. The first is that I am unable to pass sample IDs. I tried supplying the sample file with the --text_sample_ids command bu…
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Hi, I am new here.
when i tried to run my data I encounter this issue everytime.
ERROR converting summary statistics:
Traceback (most recent call last):
File "./munge_sumstats.py", line 61…
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E.g. via a `snp_readPgen()` function analogous to `snp_readBed()`.
The plink2 binary format (https://www.cog-genomics.org/plink/2.0/input#pgen) has several advantages over the plink1 binary format …