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Hi, I am a technician major in NGS and associated bioinformatic analysis from Shenzhen City, China. Recently, My boss wanted me to discriminate the different genes from two group of samples by spine.p…
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Hi!
This might be a problem my end but I seem to be having a memory issue when --easy-run or --createdb get to the calculate core and accessory distances stage. I've successfully run --easy-run on…
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should be able to import GA4GH endpoints:
https://github.com/ga4gh/server
reference:
http://ga4gh-reference-implementation.readthedocs.org/en/latest/demo.html
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Dear Torsten,
I run the Prokka’s version 1.13, but, the .gbf file was deleted. I installed Prokka on Ubuntu using the command "brew install brewsci/bio/prokka". I thought something was wrong with m…
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hi there,
thanks a lot! it is a very useful and powerful pipeline!
i used ur pipeline to analysed my genome(5 strains) data and get a result file named groups.txt, i want to know how to understand t…
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Can you please advise me why I am not getting gene annotation in gene_presence_absence.csv output file? My previous experience was I got the name of all the genes and annotations in this output. Howe…
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The searching of the genome using the text input is sometimes confusing since it is also used to display chromosome locations
We could simply make a accessory search box or dialog accessible from t…
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Your pangenome pipeline has been amazing to work with, and I have a request that I do not believe has been implemented. I am interested in looking at overlapping functionality between genomes, and I'd…
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`dashing dist` produces a distance matrix in its own new file format that is incompatible with any downstream analysis tool. Most of them expect a matrix in PHYLIP format. The conversion can be done w…
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Hi.
I really appreciate the tutorial. I did it and appreciate some modifications or missing data, which would improve it. I hope its not obvious information~
In the part of " Determining the Pang…