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We get a same-label-clash when trying to build uberon using the insect module. This comes from there being two classes called 'proneural cluster', one in the phenoscape-ext vertebrate extension module…
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for good validation samples @julie-sullivan
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the duplicate_label_synonym check will fail to find this:
```
AnnotationAssertion(rdfs:label "thermokarst"@en)
AnnotationAssertion( "thermokarst")
```
This is because the values are not ide…
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When trying to import the unified phenotype ontology (UPHENO), I run into some errors about `Too many cyclic paths (> 1000).` Is there something different about this ontology? If so, is there a way i…
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Original ticket #290
Documentation: http://obofoundry.org/faq/what-is-the-build-field.html
Also: http://www.obofoundry.org/principles/fp-002-format.html _Note: some groups publish an .obo vers…
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_From [cmung...@gmail.com](https://code.google.com/u/115850439786749293234/) on March 09, 2013 15:44:00_
For examples see the OWL, screenshots and README in: https://code.google.com/p/bfo/source/brow…
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Not exactly "biological" but part of the whole observations discussion, thus this is more an FYI. Feel free to link to other issues in, e.g., OBI.
We have a request for a remote sensing class here…
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See @drseb's question here: https://github.com/obophenotype/human-phenotype-ontology/issues/473#issuecomment-142003070
Briefly:
- MP cancer terms typically refer to disposition
- HP cancer terms refe…
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some flybase phenotypes are not mapped to their relevant FBbt or any other ontology classes.
for example. there's an annotation between a genotype and the phenotype `adult abdomen & macrochaeta | an…
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e.g. some neurons in this list have the 'cholinergic' tag. Others are 'sensory neuron', but neither appear in list