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I am trying to run blobtools Create but nothing seems to happen. I ran it for 2 hours with 5 cores and 20G memory and the only std output was:
`^M[%] : 0%| …
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Hi @rjchallis
I have pulled down the container and package into a singularity and managed to create dataset successfully. But when I try to add data such as blast results I get the following error…
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Could you give some example code of how to use the coverage & taxonomy files from `blobtools view --concoct` with CONCOCT?
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I have an assembly from Spades that for some reason will not create a dataset with blobtools2. I tried out my code with an organism that was already assembled and on ncbi and didn't have any trouble. …
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So I am trying to use bestsum as the taxrule and use the command below:
`
/home/demolnau/work/blobtoolkit/blobtools2/blobtools add \
--hits pegoscapus_spades_30X.ncbi.blastn.out \
--hits pegosca…
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Hi Rich,
I want to get the reads that align to the non-contaminant sources so that I can assemble these clean reads. I issue the following commands to do so.
`./blobtools2/blobtools filter --que…
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Hello,
I'm having difficulty installing blobtools. When I check my python version before entering this command (conda install -c anaconda matplotlib docopt tqdm wget pyyaml git), it's 3.7 or 2.7 (I t…
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Hello,
I am trying to view / filter a blob directory locally on my macOS but firefox is having issues finding the blob directory.
I have two terminals open:
1) I ran the following command within …
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Dear developers,
trying to validate my BlobDir obtained from blobtools create + add --hits --cov --busco I've got this error:
NOT VALID: Error while testing raw metadata against schema
data must …
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Hello,
I am trying to create a blobplot using a PacBio assembly of an insect genome. Here is the code I am using:
```
~/blobtools/blobtools create -i ~/Desktop/M-persicae-canu-consensus-2.fasta…