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Hello,
I've recently updated our local cbioportal to 5.2.3. instance to take advantage of @BasLee new CNA input format.
However, when I try to load a new study I am met with the following error:…
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**Environment**
* pip version: 19.2.3
* Python version: 3.6
* OS:
**Description**
When I install my python package using pip it removes everything from site-packages. This happened off a…
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I am running ampliseq version 2.4.1 to analyze Illumina single end reads from 16s rRNA sequencing data.
I have a total of 794 samples. The sever i am running the analysis has a memory of 125 GB .
…
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I was trying to use 'prevalence' function for core microbiome analysis. I followed the tutorial code and first time I got it right. Initial code is:
> ps.rel head(prevalence(ps.rel, detection = 1/10…
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Hey Rhys - trying to --build and get the following:
```11/15/2022 09:04:13 AM INFO: Time - 09:04:13 15-11-2022
11/15/2022 09:04:13 AM INFO: Command - /mnt/hpccs01/work/microbiome/conda/envs/aviary…
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Running this code below, but the OTU and phyloseq objects of going through with 0B of data
OTU = otu_table(a.otu, taxa_are_rows = TRUE)
physeq
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Aviary v0.5.3 error in finalize_stats rule. 27/29 steps done, so I guess this is the last job and the other results are fine to use?
Simplified command (recovery from long-read assembly using 20 sh…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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@antagomir the plot_composition function has changed and the arguments in tutorial no longer exists. I would prefer the previous function with options for taxonomic.level, transform in this function a…
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/eager pipeline doc…