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Hi, it is my first time to use Modkit to extract modified base signals but have some problems.
I use Dorado v0.7.1 to do SUP + modification calling (m6A,pseU).
I use minimap2 to align the unaligne…
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Dear developers,
First of all, I want to say that I am very happy with dorado and really impressed by the quality and the amount of code written for this software.
Recently, as I plan to use do…
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Hi Shian!
I have a few UCSC aligned BAM files. UCSC uses a 0 based coordinate system unlike the Ensembl genome builds.
I have my ModBamResult object and I am trying to use modbam_to_tabix to ge…
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# Issue Report
## Please describe the issue:
The `sequencing_telemetry.js` file is not generated by Dorado. However, this file can still be generated using MinKNOW (Start > Analysis mode > Basec…
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Dear all,
I have been testing dorado on a Jetson AGX Orin Developer Kit (64GB DRAM). Whenever I am using automatic batch size detection, it leads to system crash. Based on the memory usage reported…
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# Issue Report
## Please describe the issue:
About half the time I use Dorado, the progress updates scroll madly down the terminal with lots of blank lines interspersed. The other half the progr…
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I am using the complete wf-human-variation pipeline v.2.2.4 (previously I used dorado 0.6.0) with --sv --snp --phased --cnv options. I have **3 affected siblings** (A1, A2 and A3) with both the **dele…
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Hi there,
I have two questions:
1. You have mentioned that "ONTbarcoder has been optimized for protein coding gene like COI. While **there are ways** to obtain consensus for length variable non …
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Creación del logo y agregar a barra de navegación.
Requerimientos: - color dorado.
- que contenga las letras D y P.
Adicional: configurar barra de navegación.
…
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### Ask away!
If I understand correctly, `dorado` now allows for duplex basecalling with modified bases. Will this be supported in this workflow as well? If so, do you have an estimated timeline?