issues
search
Shians
/
NanoMethViz
https://shians.github.io/NanoMethViz/
Apache License 2.0
24
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
How to change heatmap color key?
#48
liuyang2006
opened
2 weeks ago
0
Export smoothed metylation data as BigWig
#47
IdoBar
opened
2 months ago
1
Error in `plot_gene()` and `plot_region()`
#46
IdoBar
closed
2 months ago
7
Obtaining statistics column from modkit
#45
psorigue
opened
2 months ago
5
The mod_prob graph does not correspond with percent_modified from modkit
#44
pubafra
opened
3 months ago
2
cluster_reads function
#43
wietingj
opened
4 months ago
0
filtering option
#42
selmapichot
opened
5 months ago
2
legend missing on the plot
#41
selmapichot
opened
5 months ago
2
Add multiple BAM files with modification tags
#40
Machadum
opened
5 months ago
8
Modbam_to_tabix with 0-based coordinate system
#39
Grigory-Kornienko
opened
5 months ago
4
dorado modified-bases 5mCG_5hmCG visualization
#38
wietingj
opened
6 months ago
6
RNA methylation visualisation
#37
rugilemat
opened
8 months ago
1
Simplify linking, fix MacOS cross builds
#36
jeroen
closed
9 months ago
0
Suggestion of improvement: parse Mm/MM and Ml/ML tags and throw warning
#35
alanlorenzetti
closed
1 year ago
6
Issue creating tabix with 4mC tsv file from nanopolish
#34
Qvdauwer
opened
1 year ago
1
Dorado input
#33
Qvdauwer
opened
1 year ago
3
Error: C++20 standard requested but CXX20 is not defined
#32
martin-g
closed
1 year ago
8
NanoMethViz for bedmethyl files
#31
kamungik
closed
1 year ago
3
DeepSignal
#30
ishamada
opened
1 year ago
3
DSS anda NanomethViz
#29
BeatrizFaustino
closed
1 year ago
5
Can I directly use log_m_ratio matrix to do methylation differential analysis?
#28
YingziZhang-github
closed
1 year ago
2
Main spaghetti lines missing in my plot
#27
YingziZhang-github
closed
1 year ago
7
Where can I find/ how can I make methy_data.bgz
#26
YingziZhang-github
closed
1 year ago
3
Preliminary modbam support
#25
Shians
closed
1 year ago
0
Accepting bam file input with modified read data.
#24
faulk-lab
closed
1 year ago
6
fix: moving the rug tassels of the plotting function to outside
#23
madhav-madhusoodanan
closed
1 year ago
2
How to process Nanopore Remora output for DMR analysis?
#22
kaanokay
closed
2 years ago
5
nanopolish input format
#21
yinshiyi
closed
1 year ago
2
Adding plot of methylation values as points along genomic coordinates
#20
Shians
opened
2 years ago
0
clarification of methy_to_bsseq() function
#19
paulinor-42
opened
2 years ago
2
Let NanoMethResults use multiple methylation files
#18
Shians
opened
2 years ago
0
convert into full DGEList (edgr)
#17
0Bernhard
opened
2 years ago
1
`cluster_region()` fails on poorly covered regions
#16
Shians
opened
2 years ago
0
`cluster_regions()` fails when any region contains invalid `chr`
#15
Shians
opened
2 years ago
0
export_data_to_metylKit
#14
0Bernhard
opened
2 years ago
2
I found100% prevalence for 6ma data
#13
BaylorLyu
opened
2 years ago
1
Finding genes with highest and lowest probability of methylation
#12
0Bernhard
opened
2 years ago
6
create_tabix_file output mixed up.
#11
cstill3928
closed
3 years ago
3
only one object from and group of 2 is plotted
#10
senukobla
opened
3 years ago
1
MDS Plotting function
#9
Shians
opened
3 years ago
2
Violin plot function
#8
Shians
opened
3 years ago
0
Improve aggregate plotting behaviour
#7
Shians
closed
3 years ago
1
Add vignette for importing gene annotations
#6
Shians
closed
3 years ago
1
Megalodon per_read_text modified_bases output not being recognized
#5
dipannita-g
opened
3 years ago
7
Converting TSV for use
#4
amootta
opened
3 years ago
1
How to use own annotation?
#3
JWDebler
opened
3 years ago
3
megalodon input, which file?
#2
JWDebler
opened
3 years ago
1
Unable to install
#1
dipannita-g
closed
3 years ago
1