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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/markziemann/mitch
Confirm the following by editin…
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Hi,
Months ago (over a year ago) I deployed https://jhubiostatistics.shinyapps.io/wgbsExprs/ from files found here https://github.com/LieberInstitute/brain-epigenomics/tree/master/meth_vs_expr/meth…
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Hello,
I was very interested in your new method to predict gene expression. In your Nature Genetics paper, you mentioned the first component of ExPecto (deep learning part) is based on the training…
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**Describe the bug**
I'm hoping to run Cromwell in server mode, configured to dispatch singularity jobs to slurm. I have successfully run this pipeline with singularity without slurm. When I change…
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## Feature Request
Simple launch with using Dockstore CLI.
### Desired behaviour
As a user of the site I'd like a launch with button that let's me see the Dockstore CLI commands I would use to local…
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Hi,
Using the ChromHMM states from Epigenomics Roadmap, I had a bigbed of the epigenomic state of each segment of the genome. I'd like to calculate the mutation rate in each genomic segment, based on…
drmjc updated
5 years ago
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Based on a conversation with the Epigenomics group that is using Cromwell 34 on PAPI v2 --
it seems that a task can fail, not delocalize an expected output and the workflow will continue to start a d…
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As a researcher I'd like to be able to access and compute on ENCODE ChIP-Seq data in Firecloud and Saturn.
Assumptions:
* Data is in GCS
* All the logic and the schema used for the trial are good…
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The below is using the washU epigenome browser v46.1
1st link/json is **OK** to show hammock track: [1st link/json](http://epigenomegateway.wustl.edu/browser/?genome=hg38&tknamewidth=275&datahub=h…
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