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We don't have gene sets or signatures generated by the IDG. Also, the LINCS program is missing, so having only IDG is weird.
These libraries can be associated with the following programs:
Achill…
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Hey
I am trying to run the whole pipeline for crop-seq, i am at the assign_gRNA_cells.py step and it is giving error.
File "assign_gRNA_cells.py", line 359, in
prj.add_sample_sheet()
Fil…
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This is an important model contribution to both deep learning and epigenomics and we should make sure it is thoroughly documented. I’m happy to start creating issues and pull requests for updating doc…
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**Proposed Domain**
Bioinformatics
**Content Summary**
I don't know if this would go in the existing [page](http://sciwiki.fredhutch.org/generation/human_shareDeposits/) about data sharing, b…
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Hi,
Months ago (over a year ago) I deployed https://jhubiostatistics.shinyapps.io/wgbsExprs/ from files found here https://github.com/LieberInstitute/brain-epigenomics/tree/master/meth_vs_expr/meth…
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In your criteria in filtering cells based on ratio, it seems that you calculated the ratio of sequencing reads belong to the "bins" overlapped with promoter region.
However, this ratio would be affec…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/itsvenu/ALPS
Confirm the following by editing eac…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/markziemann/mitch
Confirm the following by editin…
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Hello,
I was very interested in your new method to predict gene expression. In your Nature Genetics paper, you mentioned the first component of ExPecto (deep learning part) is based on the training…
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**Describe the bug**
I'm hoping to run Cromwell in server mode, configured to dispatch singularity jobs to slurm. I have successfully run this pipeline with singularity without slurm. When I change…