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Hi,
With version 0.12.0, I cannot run fastqc on my fastq.gz files using my university's cluster. When I unzip the files, then it is possible. The error message that arises for fastq.gz files is the…
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## Bug report
`nextflow inspect nf-core/rnaseq` fails with error:
```
The following invalid input values have been detected:
You used a core Nextflow option with two hyphens: '--cache'. Ple…
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I started with two files to understand your approach: Preprocessing of the GRADS SARC PBMC data and PCA of the GRADS PBMC baseline expression data. I have not yet seen a file that describes your appro…
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## Expected Behavior
The cwltool execution should stop
Ticket is in a way related to https://github.com/common-workflow-language/cwltool/issues/1433
## Actual Behavior
It just hangs
## Workfl…
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It seems that falco doesn't handle reverse-complemented read sequences in mapped BAM files correctly.
Specifically, when flag bit 0x04 of a read is not set (i.e. when the read is mapped), falco shoul…
wm75 updated
3 months ago
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I have Illumina novaseq, pair ended reads and I want to trim the non-internal adaptors from both ends. The adaptors I used for library praparation are NEB next adaptors for illumina. So I executed the…
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1. SRA to fastq fastqdump -- split-3
2. FastQC
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We have a .fq.gz file and we tried to make "fastqc" for each read using terminal by the following commands. However, using gzip, gunzip and tar but gave error
for f in ~/ngs2/fqData/*.fq.gz;do fastqc…
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bên mình báo các package incompatible ,và package nào có số phía sau là báo "does not exits". Nhờ bạn giúp dùm. Thân
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Hi Mark.
I'm having an issue where it doesn't appear to be installing the conda environment. I'm in my base conda env, and I'm running the following command:
nextflow run main.nf -resume -profil…