smithlabcode falco issues

smithlabcode / falco

A C++ drop-in replacement of FastQC to assess the quality of sequence read data

https://falco.readthedocs.io

GNU General Public License v3.0

98 stars 11 forks source link

issues

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Bumping version number to 1.2.5

#79 andrewdavidsmith closed 1 week ago
0
Adding option to exit without error on empty input

#78 andrewdavidsmith closed 1 week ago
0
PacBIO CCS long reads?

#77 jianshu93 opened 1 month ago
0
Different progress bar behavior?

#76 pdimens closed 1 month ago
2
Updating autotools config files for c++17

#75 andrewdavidsmith closed 1 month ago
0
dont fail on empty file

#74 pdimens closed 1 week ago
12
Changes to bump version number

#73 andrewdavidsmith closed 2 months ago
0
Fixing bug in adapter identification for BAM format

#72 andrewdavidsmith closed 2 months ago
0
Changing adapter matching so that self-overlapping patterns are only matched once per read

#71 andrewdavidsmith closed 2 months ago
0
Malloc error when using extra tags in fastq header

#70 lucacozzuto opened 3 months ago
2
Difference between falco and fastqc in reported polyA/polyG content

#69 wm75 closed 2 months ago
12
Preparing for v1.2.3

#68 andrewdavidsmith closed 3 months ago
0
Removing progress bar for BAM processing

#67 andrewdavidsmith closed 3 months ago
0
Updating workflow with tests

#66 andrewdavidsmith closed 3 months ago
0
Updating adapter and contaminant files from FastQC v0.12.0

#65 andrewdavidsmith closed 3 months ago
0
changes in FASTQC 0.12: Adjust default adapters and add total base count

#64 wm75 closed 3 months ago
5
Fixing a bug that checked BAM things even when not compiled with HTS support

#63 andrewdavidsmith closed 4 months ago
0
Remove progress bar for BAM input

#62 andrewdavidsmith closed 4 months ago
0
Attempt to fix issue #59

#61 andrewdavidsmith closed 4 months ago
0
Checking that we do not access past the end of the adapter summary stats

#60 andrewdavidsmith closed 4 months ago
0
falco doesn't consider BAM flag bits

#59 wm75 opened 5 months ago
4
Documentation

#58 lskatz closed 6 months ago
3
corrupted size vs. prev_size

#57 nick-youngblut opened 7 months ago
1
Floating point exception if fastq is empty

#56 nick-youngblut opened 1 year ago
11
Segmentation fault seemingly at random with v1.2.1

#55 edgardomortiz closed 8 months ago
7
[Question]; How is % duplication calculated compared to FastQC

#54 tamuanand closed 1 year ago
2
Bam t

#53 masarunakajima closed 1 year ago
0
Bam t

#52 masarunakajima closed 1 year ago
0
Bam t

#51 masarunakajima closed 1 year ago
0
is_fastq_gz for bam file

#50 masarunakajima opened 1 year ago
0
--threads option

#49 serge2016 opened 1 year ago
0
Fix error in parsing gzip file

#48 y9c closed 1 year ago
4
why does falco generate zero file size output?

#47 typekey closed 1 year ago
0
X axis title is overwritten on values. How to fix this?

#46 antramittal14 opened 1 year ago
0
Segmentation faults apon writing output

#45 kmshort opened 1 year ago
8
malloc with nanopore FASTQ file

#44 Midnighter closed 8 months ago
5
setting "--format fastq" with gzip-compressed FASTQ crashes falco

#43 guilhermesena1 opened 2 years ago
0
Non-identical length distribution

#42 schorlton opened 2 years ago
5
falco v1.1.0 hangs when processing bam file

#41 msnyder424 closed 2 years ago
7
Memory leak or stall?

#40 schorlton closed 2 years ago
16
memory issue?

#39 lucacozzuto closed 2 years ago
4
Requested output format changes

#38 andrewdavidsmith opened 2 years ago
6
Adapter content plot shows wrong read lengths

#37 shigita closed 2 years ago
1
Require: Support multiple fastq files in subfolder.

#36 bakerwm closed 2 years ago
3
[Feature request] Add option to subsample reads

#35 y9c closed 2 years ago
4
Error when processing bam file: No known encoding with chars < 33. Yours was 9)

#34 msnyder424 closed 2 years ago
11
add CSS and javascript to HTML page source code

#33 guilhermesena1 opened 2 years ago
0
fix bug in short reads

#32 y9c closed 2 years ago
2
Package adapters and other default files with bioconda

#31 schorlton closed 2 years ago
4
show all positions with adapters - got rid of fastqc diff adapters le…

#30 Shelestova-Anastasia closed 2 years ago
0