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smithlabcode
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falco
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
https://falco.readthedocs.io
GNU General Public License v3.0
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falco doesn't consider BAM flag bits
#59
wm75
opened
6 days ago
0
Documentation
#58
lskatz
closed
1 month ago
3
corrupted size vs. prev_size
#57
nick-youngblut
opened
2 months ago
1
Floating point exception if fastq is empty
#56
nick-youngblut
opened
8 months ago
11
Segmentation fault seemingly at random with v1.2.1
#55
edgardomortiz
closed
3 months ago
7
[Question]; How is % duplication calculated compared to FastQC
#54
tamuanand
closed
9 months ago
2
Bam t
#53
masarunakajima
closed
10 months ago
0
Bam t
#52
masarunakajima
closed
10 months ago
0
Bam t
#51
masarunakajima
closed
10 months ago
0
is_fastq_gz for bam file
#50
masarunakajima
opened
10 months ago
0
--threads option
#49
serge2016
opened
11 months ago
0
Fix error in parsing gzip file
#48
y9c
closed
10 months ago
4
why does falco generate zero file size output?
#47
typekey
closed
10 months ago
0
X axis title is overwritten on values. How to fix this?
#46
antramittal14
opened
1 year ago
0
Segmentation faults apon writing output
#45
kmshort
opened
1 year ago
8
malloc with nanopore FASTQ file
#44
Midnighter
closed
3 months ago
5
setting "--format fastq" with gzip-compressed FASTQ crashes falco
#43
guilhermesena1
opened
1 year ago
0
Non-identical length distribution
#42
schorlton
opened
1 year ago
5
falco v1.1.0 hangs when processing bam file
#41
msnyder424
closed
1 year ago
7
Memory leak or stall?
#40
schorlton
closed
1 year ago
16
memory issue?
#39
lucacozzuto
closed
1 year ago
4
Requested output format changes
#38
andrewdavidsmith
opened
1 year ago
5
Adapter content plot shows wrong read lengths
#37
shigita
closed
1 year ago
1
Require: Support multiple fastq files in subfolder.
#36
bakerwm
closed
1 year ago
3
[Feature request] Add option to subsample reads
#35
y9c
closed
1 year ago
4
Error when processing bam file: No known encoding with chars < 33. Yours was 9)
#34
msnyder424
closed
2 years ago
11
add CSS and javascript to HTML page source code
#33
guilhermesena1
opened
2 years ago
0
fix bug in short reads
#32
y9c
closed
2 years ago
2
Package adapters and other default files with bioconda
#31
schorlton
closed
1 year ago
4
show all positions with adapters - got rid of fastqc diff adapters le…
#30
Shelestova-Anastasia
closed
2 years ago
0
improve: process fastq wth different systems line endings https://git…
#29
Shelestova-Anastasia
closed
2 years ago
2
adapters with different length or length more then 32 https://github.…
#28
Shelestova-Anastasia
closed
2 years ago
2
per base sequence quality fix: https://github.com/smithlabcode/falco/…
#27
Shelestova-Anastasia
closed
2 years ago
0
Segmentation fault (core dumped) for zero length reads
#26
y9c
closed
2 years ago
9
Data for "Per base sequence quality" section differ from FastQC
#25
Shelestova-Anastasia
opened
2 years ago
9
No known encoding with chars < 33. Yours was 13 (CR LF as line break in fastq sample)
#24
Shelestova-Anastasia
closed
2 years ago
0
adapter too long. Maximum adapter size is 32bp
#23
Shelestova-Anastasia
closed
2 years ago
0
Broken script in HTML report
#22
RoadRoller
closed
1 year ago
1
JSON Output
#21
oschwengers
opened
2 years ago
1
Force file format not work
#20
y9c
closed
2 years ago
2
Too many adapters error while using built-in adapter file
#19
davised
closed
2 years ago
5
Does not correctly decode old Illumina Phred score encoding
#18
shigita
closed
2 years ago
4
Overrepresented Sequences shows "no hit" for all sequences
#17
edgardomortiz
closed
2 years ago
10
Adaptor content is 0 unless we specify --adapters
#16
edgardomortiz
closed
2 years ago
3
No results for Kmer content module in HTML and fastqc_data.txt
#15
RoadRoller
closed
2 years ago
4
Nanopore support
#14
arunvv90
opened
3 years ago
3
Q: How to make `falco` work with `multiqc`?
#13
sklages
closed
3 years ago
2
Segmentation fault for FASTQ (merged reads from NovaSeq)
#12
vmikk
closed
3 years ago
2
version number for v0.2.2
#11
romaingroux
closed
2 years ago
1
output is overriden when multiple fastq files are provided.
#10
guilhermesena1
opened
3 years ago
7
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