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Hello,
I am trying to compile Nanopolish on Apple silicon. I use the following commands:
```
git clone --recursive https://github.com/jts/nanopolish.git
cd nanopolish
make
```
For both x8…
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Hello,
I am constructing a human pan genome by pggb from more than 50 haplotyped-resloved genomes according to the [HPRC pipeline ](https://github.com/pangenome/HPRCyear1v2genbank). My command is
…
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Hi `smoothxg` team,
I am trying to use `smoothxg` to smooth a huge graph (~131 Gbytes in `.gfa`) from seven haplotypes of different species of the same genera. Although they are just a few individu…
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Dear Author,
I am currently running STAARpipeline for our research work. Since STAARpipeline recommends us use "FastSparseGRM" to calculate genetic principal components (PCs) and the ancestry-adju…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/143) by madhubioinfo (Bitbucket: [madhubioinfo](https://bitbucket.org/madhubioinfo), GitHub: [madhubioinfo](https://github.com/madhubi…
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I am a freshman to this software, please forgive me if i leave out some information while asking for help.
My command line is:
R -e 'library("STITCH"); STITCH(chr="chr1", bamlist="bamlist.txt", sa…
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Hi,
I'm running flopp on a sample with ploidy of 4.
We get an error:
`thread 'main' panicked at 'index out of bounds: the len is 0 but the index is 0', src/vcf_polishing.rs:715:9`
I do ge…
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Hello,
Today I've run into an error that consistently occurs at iteration 26 for one of my chromosomes. It seems likely to be caused by something happening in iteration 25, which is the default split…
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Hi Robert & long-time bactopia users!
I've been struggling to translate the following (working) Dragonflye assembly parameters to Bactopia/assembler image thereof:
```
#Set input/output folder …