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Hi,
I'd love to be able to install interproscan using conda, but no package is currently available. Would you be interested if I work on it?
Currently it's not easy to package it because the relea…
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Hi,
I have run of ideas on how to solve this.
Problem: funannotate annotate breaks in the dbCAN stage.
```
ValueError: The ID or alternative IDs of Hit 'CE10' exists in this QueryResult.
```
…
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we finished gene predict by "funannotate predict" and "funannotate iprscan", but when we use "funannotate annotate", An error message appeared：
$funannotate annotate -i ./fun -d /data/liuyuanchao/…
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Hi,
How to merge following two type of hmm profiles (hmmsearch does not work if I cat them directly):
## type 1
HMMER3/f [3.3.2 | Nov 2020]
NAME 1-cysPrx_C
ACC PF10417.11
DESC C-terminal…
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Hi @OmkarSaMo, take a look at this two runs:
**Rnammer** called:
```
[18:27:12] This is prokka 1.14.6
[18:27:12] Written by Torsten Seemann
[18:27:12] Homepage is https://github.com/tseemann/…
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I started to work on dependencies needed for interproscan. Here a resume was is needed: https://github.com/ebi-pf-team/interproscan/issues/95
7 dependencies were missing... I'm close to have resol…
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Fresh install of Squeezemeta 1.5.0.
Attempted to use configure_nodb.pl from a running 1.5.0 installation on another machine to avoid entire DB download (data cap).
configure_nodb.pl failed.…
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Error: HMMER3 requires SSE or VMX vector instructions.
Supported platforms are x86 and Power PC.
No supported vectorization found for your machine.
Is there any way I can use Hmmer on my system??…
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I have installed interproscan-5.51-85.0. When I run interpro.sh, it gives me error
```
Checking any hmm models that need indexing ... this may take a few minutes
SSI index file data/gene3d/4.3.0/…
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[10:10:19] Will use hmmer3 to search against /share/apps/prokka/1.11/bin/../db/hmm/arc.hmm with 8 CPUs
[10:10:19] Running: cat data_out\/Foo_contigs\/\/arc.hmm.faa | parallel --gnu --plain -j 8 --bloc…