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RepeatMasker uses Dfam and RepBase libraries to mask the input reference. I have some questions:
(1) RepeatMasker has a -lib parameter to use a custom library. Is this library in FASTA format? Does i…
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Stemming from https://github.com/geneontology/go-ontology/issues/12343.
The ‘cytolysis’ node needs work to clarify the meaning of the term (phenotype vs. active process), decide on its fate (in sco…
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Hello,
I am getting this error: error, no TPM value specified for transcript [TRINITY_DN0_c0_g1_i11] of gene [TRINITY_DN0_c0_g1] for sample 5_gene_count at /opt/software/Trinity/2.15.1-foss-2022a/t…
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publication: https://academic.oup.com/nar/article/51/D1/D1288/6761740
example drug record: http://drugmap.idrblab.net/data/drug/details/DM6A0X7
download page: http://drugmap.idrblab.net/full-data-do…
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with schema.properties being
```
nomer.append.schema.output=[{"column":0,"type":"path.kingdom.name"}, {"column":1,"type":"path"}, {"column": 2,"type":"pathNames"}]
```
and
```
echo -e "\t…
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We need to be able to model pathogenicity.
The first decision we need to make is whether to use the PATO (PATO:pathogenicity and inheres in some 'whole organism') vs the GO pattern ('increased rate…
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We are going to start doing some work in our group comparing transcriptome samples across a number of species. It looks like the upheno ontology is exactly what we are looking for! The 6 species we ar…
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Batch processing of all the treatments should include the following issues
* Accession numbers
* SubSubSection types normalization
* vernacularName
* COL IDs on treatment taxon names and cited tax…
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I am trying to softmask a fungal genome and get the following error:
![image](https://user-images.githubusercontent.com/61157676/74671753-d8e4fe00-5179-11ea-9750-547b7309d7b5.png)
When I use ls to…
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related to #11
Currently, EOL ids can be resolved against the EOL taxonomy support.
Desired is to enable name based alignment using the EOL taxonomy support.
e.g.,
```
echo -e "\tHomo sa…