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- Review of alignment and SNP calling algorithms for next-generation sequencing data (Mielczarek, 2015)
- Genotype and SNP calling from next-generation sequencing data (Nielson, 2011)
- Best practices…
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Hi,
I am used to Vikodak and recently, the website is no longer active. Can I have an example for the raw data (.csv) to import into R for biomatr? I am interested in retrieving the functional ann…
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- Accessing Public Data - by Dieter Bulach - from assembly to annotation - from the recent Introductory Course in Public Health Microbial Genomics.
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Hi Chris,
I have generated the Cluster_scgs.freq file (file size 4109754) and when I tried the variant_filter.py script I got this error, do you have an idea of what is going on? N is null?
Thanks…
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Post your lay and scientific abstracts below. Aim for a maximum of 250 words for both. Thanks!
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- 1. What does this package do? (explain in 50 words or less)
Parses GenBank and GenPept files into a useful datastructure which integrates with the Bioconductor ecosystem.
- 2. Paste the full DES…
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Executing on Ubuntu 16.04.
The following is the output containing the errors from `./run_tests.sh`
```
TEST: tests/lambda_mult_ref_read/testcmd.sh clean
+++++++++++++++++++++++++++++++++++++++…
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The "_snp.txt" files contains information about original scientific publication for SNPs. However it might not be straightforward to find the correct publication. More information about those papers n…
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Microbial genomics use the `/product` field for protein names. Please add it to the default tags to label features please, as below:
```
"style": {
"label": "name,id",
"description": "produ…
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What should we teach about installing software, and what tools should we use when teaching? Discussion started with [this mailing list thread](http://lists.software-carpentry.org/pipermail/discuss_lis…