chrisquince DESMAN issues

chrisquince / DESMAN

De novo Extraction of Strains from MetAgeNomes

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issues

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bam-readcount step stuck

#52 StickHu opened 1 year ago
2
Regarding phasing variants

#51 mdrishti opened 1 year ago
0
Anvio variability profile to DESMAN

#50 malihaaziz opened 3 years ago
0
cdd_to_cog.tsv

#49 marcomeola closed 3 years ago
1
Python2 vs python3

#48 tstraub89 opened 3 years ago
6
Snakefile error

#47 tstraub89 opened 3 years ago
0
Pandas remove

#46 chrisquince closed 4 years ago
0
Pandas error in Filter_Variant step while using Desman snakemake version

#45 osvatic opened 4 years ago
12
EMPTY OUTPUT from running desman

#44 chiaramazzoni opened 4 years ago
8
Error in pileups_to_freq_table.py, pileup file NOT FOUND

#43 chiaramazzoni opened 4 years ago
3
ERROR in GeneAssign.py in straintigs

#42 lauren-mak opened 4 years ago
0
Memory requirements, number of strains

#41 mherold1 opened 4 years ago
0
Error in CalcGeneCov.py for genes with a single SNP

#40 deropi opened 4 years ago
0
ERROR in estimateStrainCountDesman

#39 osvatic opened 5 years ago
6
Error with concoct_refine

#38 K-A-Meyer closed 5 years ago
0
Questions about multiple steps on the pipeline

#37 ilevade opened 5 years ago
2
Two issue with obtaining strain bins

#36 xif033 opened 5 years ago
0
Error executing process > 'estimateStrainCountDesman (19)'

#35 xif033 opened 5 years ago
2
README.md tweaks + minor edits

#34 MatthewWolff closed 5 years ago
1
How can I obtain preidentified 982 SCSGs?

#33 kmin940 opened 5 years ago
3
Identifying core COGs for other species

#32 ilevade closed 5 years ago
0
Questions regarding complex synthetic mock data.

#31 kmin940 opened 5 years ago
0
ERROR estimateStrainCountDesman (3) with desmanflow

#30 xvazquezc opened 5 years ago
19
Python type issue

#29 njdbickhart closed 5 years ago
1
Error running automated workflow on test data

#28 pug-ventures opened 6 years ago
2
Add python shebang to python scripts

#27 johnne closed 6 years ago
2
DESMAN ready for conda packaging

#26 johnne closed 6 years ago
3
Error when running Desman test: "Infer strains with Desman"

#25 sacl07 opened 6 years ago
1
Recursion Error when running desman

#24 vnsriniv closed 6 years ago
3
Migrate DESMAN to Python3

#23 ozcan closed 6 years ago
3
conda install

#22 JChristopherEllis closed 6 years ago
15
ConfPlot.R issue

#21 NielQC opened 6 years ago
0
KeyError: 13 when running DESMAN

#20 alexcritschristoph opened 6 years ago
7
Issue with GeneAssign.py/Eta_sampler.py - IndexError

#19 vaxherra closed 6 years ago
1
Cutoff for SNV uncertainty

#18 liuxianghui opened 6 years ago
2
Variant_Filter.py error

#17 nicoTR closed 6 years ago
33
Issue with SelectContigsPos.pl and ExtractCountFrep.pl

#16 gaohanlisa opened 7 years ago
2
Issue Contig taxonomic assignment

#15 rprops opened 7 years ago
3
Snakemake complete ex

#14 chrisquince closed 7 years ago
0
Snakemake complete ex

#13 alneberg closed 7 years ago
0
support for specifying single copy regions via a bed file given on the command-line

#12 koadman closed 7 years ago
3
support for specification of the single copy region bed on the command-line

#11 koadman closed 7 years ago
0
Desmanflow mac

#10 alneberg closed 7 years ago
0
fix for new samtools & improved usage docs

#9 koadman closed 7 years ago
0
Trying to fix error with snakemake run_desman'

#8 alneberg closed 7 years ago
0
desmanflow automated strain contig assignment workflow

#7 koadman closed 7 years ago
0
ExtractCountFreqP.pl broken?

#6 alneberg closed 7 years ago
2
desman: Make GeneAssign.py, Variant_filter.py executable.

#5 wwood closed 7 years ago
0
error with desman

#4 fwhelan closed 7 years ago
11
bam-readcount give too many errors for strain dataset

#3 liuxianghui closed 7 years ago
2