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https://mp.weixin.qq.com/s/nNDL95uikH-8rEXAf6hphw
ixxmu updated
2 months ago
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Hi,
I have successfully used Canu for all my de novo assemblies and I am embarking on creating a snakemake-env for running Canu+medaka+diamond for viral metagenomic sequencing. Has anyone successf…
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Hi @hildebra,
Thank you and your team for developing the LotuS2 pipeline. Recently, I came across this pipeline as it has many options for clustering and denoising algorithms. I am interested in D…
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Draft content for block 2 of the workshop.
superset of issues #24, #25, #26.
Getting data from:
- list of Genbank IDs (@KatherineCaley todo)
- EnsemblLite (@GavinHuttley todo)
- Published…
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Draft content for block 3 of the workshop.
This is the superset of issues #27, #28, and #29.
### Data
- Workshop data available [here](https://www.dropbox.com/scl/fi/gse156zgu4sl5u86s21on/L…
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Hello, I have a huge target database (123K microbial genomes) and must `search` 60 datasets ranging from a few sequences of size 31 to 200K sequences with some reaching more than 100K nucleotides. Eve…
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## Preferred term label
GEXSCOPE
## Textual definition
A microwell-based technology developed by Singleron to prepare mRNA from single cells or single nuclei and generate an NGS library for h…
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Hi Everyone,
I hope everyone is well. I am trying to assemble small genomes (microbial samples) and plasmids. Unfortunately from time to time, I am getting contigs that have dimerization or partia…
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Dear Canu team,
I am currently using canu to assembly a highly repetetive fungal genome (>2/3 repetitive elemnts, total genome size roughly 127 Mbp). Since our cluster (SLURM) does not support auto…
AlWa1 updated
10 months ago
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From today's multiorganism call - the group proposes to obsolete the following terms:
- [x] 'induction by symbiont of host defense response'
- [x] 'induction by symbiont of defense-related host c…