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cogent3
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Cogent3Workshop
Materials for the Phylomania workshop
BSD 3-Clause "New" or "Revised" License
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update workshop objectives
#46
GavinHuttley
opened
8 months ago
1
data links for LO - 3
#45
KatherineCaley
closed
8 months ago
4
Installing the cogent3 workshop environment on a Mac
#44
khiron
closed
7 months ago
6
LO - 2 - Getting Data
#43
KatherineCaley
closed
7 months ago
8
wiki item for loading a file into your container
#42
khiron
closed
7 months ago
0
Test of using devcontainers
#41
khiron
closed
7 months ago
2
LO - 3 - From orthologs to alignment
#40
KatherineCaley
closed
7 months ago
5
Use a non elevated user for the container
#39
khiron
closed
7 months ago
0
Use a .devcontainer for the workshop environment
#38
khiron
closed
8 months ago
0
LO - 4 - getting data related to a publication
#37
GavinHuttley
opened
8 months ago
2
Add docker desktop for linux to wiki docs
#36
khiron
opened
8 months ago
0
Rework the docker video
#35
khiron
opened
8 months ago
1
Verify docker is working
#34
khiron
opened
8 months ago
1
Focus the usage on VS code
#33
GavinHuttley
closed
8 months ago
3
backref from colima
#32
GavinHuttley
closed
8 months ago
1
c3 stickers
#31
KatherineCaley
closed
8 months ago
9
Test docker documentation and container
#30
khiron
closed
7 months ago
15
LO - 3 - Unsolved / Important problems
#29
GavinHuttley
closed
8 months ago
1
LO - 3 - Alignments
#28
GavinHuttley
closed
8 months ago
2
LO - 3 - Identifying and dealing with data issues
#27
KatherineCaley
closed
8 months ago
8
LO - 2 - explore the ncbi command line tools
#26
GavinHuttley
closed
8 months ago
12
LO - 2 - Getting data
#25
KatherineCaley
closed
8 months ago
2
LO - 2 - Sampling ensembl
#24
GavinHuttley
closed
8 months ago
1
LO - 1 - Understanding experimental design issue
#23
GavinHuttley
opened
9 months ago
0
devise a post workshop survey
#22
GavinHuttley
opened
9 months ago
0
Add "how to use cogent natively" to wiki
#21
khiron
opened
9 months ago
0
Clean up c3dev so we can reference it in the workshop
#20
khiron
opened
9 months ago
0
Add intro to bioconda/PyPi to wiki
#19
khiron
opened
9 months ago
0
Investigate jupyterhub
#18
khiron
opened
9 months ago
0
Add "How to raise/contribute issues" to wiki
#17
khiron
opened
9 months ago
0
Add "how to ask for help" to wiki
#16
khiron
opened
9 months ago
2
Add intro to conda to wiki
#15
khiron
opened
9 months ago
0
Add intro to pip to wiki
#14
khiron
opened
9 months ago
0
Add intro to git/github to wiki
#13
khiron
opened
9 months ago
0
Create a screen cast for the process of setting up a machine
#12
khiron
opened
9 months ago
4
Docker
#11
khiron
closed
9 months ago
0
docker image extras
#10
GavinHuttley
opened
9 months ago
2
Create pre-workshop survey
#7
KatherineCaley
closed
9 months ago
2
Flowchart wrangling and checking data
#6
khiron
closed
9 months ago
4
trial colima on Apple silicon macs
#5
GavinHuttley
opened
9 months ago
1
Write an app that reads in accession numbers and downloads from GenBank.
#4
GavinHuttley
opened
9 months ago
0
Learning outcomes
#3
GavinHuttley
opened
10 months ago
3
Setting up compute environment
#2
GavinHuttley
closed
9 months ago
4
What do participants need?
#1
GavinHuttley
opened
10 months ago
1