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I am using this data set generated from a Mascot search:
https://xiview.org/xi3/network.php?upload=11434-00297-47421-04190-96127
And then look at the crosslink between 336 and 419 with a score of 11…
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While #7098 already fixes a related bug, I came across one more:
According to the examples in the [mzIdentML docs](https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_…
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I have a set of *mzIdentML* files (exported from Mascot) that pass validation (some warnings, no errors), but `IDFileConverter` throws an `Unexpected internal error` when trying to convert them to e.g…
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In project PXD035522 (human), we have multiple proteins from Rabbit (P02057) and (G1SSJ7).
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Dear Lutz
If I understood correctly, in the default setting, the following line defines the search for BS3amidated linear peptide
modification:linear::SYMBOLEXT:bs3nh;MODIFIED:K,S,T,Y;DELTAMASS:…
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Hi,
When mzIdentML (mzID) output is selected, and Comet finds multiple identifications for the same spectrum, each identification is reported in a separate `SpectrumIdentificationResult` tag. This …
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**Purpose:** I'd like a table, not specifically a metric but still often desirable to have that identification information on PSMs in an easily accessible format at a point in any workflow, where you …
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I have *mzQuantML* files from label-free experiments (produced by [Dinosaur](https://github.com/fickludd/dinosaur)) containing the following section:
```
…
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Hello! I would like to ask if you are planning to make a Proteome Discoverer node for you tool. It would be very usefull for our facility and I think that for the entire community. Thanks!
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Does PIA work also with DIA data?
Is there a way to integrate the [OpenSwath pipeline](http://www.openswath.org/en/latest/index.html#) with PIA?