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Hi, I'm interested in trying to use the PheKnowLator integrated knowledge graph in R with the [OntologyX packages](https://cran.r-project.org/web/packages/ontologyIndex/vignettes/intro-to-ontologyX.ht…
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I am getting ready to add lots of terms to the OBI OntoFox sheets.
There's roughly
- 700 ChEBI terms
- 40 PR terms
Plus the following, whose roles in assays may require some more scrutiny.
…
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Transferring an email thread into a ticket.
OBO files are typically 'terminals' in our release chains - i.e. final release products. It is very common to **hack** OBO files into shape after they ar…
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This issue follows from a tangential discussion spawned in the TRAPI ticket [here ](https://github.com/NCATSTranslator/ReasonerAPI/issues/185#issuecomment-740322400) - regarding how to capture 'Mecha…
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Use this form to register a new ontology with the OBO Foundry. Please read the instructions provided here:
http://obofoundry.org/docs/NewOntologyRegistrationInstructions.html
## Ontology title
Da…
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```
[Tue Aug 18 09:05:47 2020]
rule Merge:
input: /home/ubuntu/kg2-build/kg2-owl.json, /home/ubuntu/kg2-build/kg2-uniprotkb.json, /home/ubuntu/kg2-build/kg2-semmeddb-edges.json, /home/ubuntu/kg…
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# Summary
The SWEET ontology suite should fulfill the role of a junction for textual definitions. An example can be found below
```
### http://sweetontology.net/matrSediment/Soil
:Soil rdf:type o…
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### TASK
Need to create a figure that provides an overview of the `pkt` knowledge graph construction framework
#### TODO
- [x] Finish edits to build, including the CI/CD framework
- [x] …
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The OBI uses the concept of value specifications (*obo:OBI_0001933*) to model data estimations, simulations, targets and settings. Currently, there are classes representing specifications for categori…
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**Describe the bug**
When executing this command:
`kgx transform --input-format obojson --output-format tsv --output go go.json`
I'm seeing this error:
```
[KGX][json_transformer.py][ …