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**[THE LATEST LATEST UPDATE FOR POSTERITY: THIS IS NOW RESOLVED THANKS TO PRs by @Ge0rges, #2110 and #2112 -- EVERYTHING YOU SEE BELOW IS HISTORY]**
# Latest update to this issue
We now realize …
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### Assembly Region
chr2_PATERNAL:89416996-89474048
### Assembly Version
v0.7
### ont_evidence subregions
89433089-89435136 (Clipped)
89463809-89467904 (Clipped)
89434615-89473806 (Low_Qual)
89472…
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I'm trying to run `vg deconstruct` to generate a VCF of the differences between hg38 chr1 and CHM13.
I ran
```
$ wget https://s3-us-west-2.amazonaws.com/human-pangenomics/pangenomes/freeze/free…
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Improve the quality of the first figure, if the figure is from the research article, maybe you can not use it unless it has a compatible-licence. Use directory instead of folder. Show an example of th…
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Hello,
Some of the tools, like Pigeon/SQANTI3 for bulk RNA ISO-Seq requires GTF file.
Can you please provide GTF version of chm13.draft_v2.0.gene_annotation.gff3 , Original link
https://s3-us…
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Hi Blend team, I am trying to run blend on my laptop to map recently released ONT duplex reads. I cut single fastq.gz into small chunks (each contains 20000 reads) and run below command. But after gen…
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```
anvi-self-test --version
Anvi'o version ...............................: esther (v6.1)
Profile DB version ...........................: 31
Contigs DB version ...........................: 14
…
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Is there any config setting for CHM13-V2.0 ? I did the following to load the CHM13 genome.
```
chm13 = create('LGV')
chm13.set_assembly("https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/…
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When trying to align short reads to the HPRC pangenome, I got a signal 11 error. It works with vg 1.44.0.
I downloaded the HPRC CHM13-based pangenome index from the S3 repo and ran with:
```
wg…