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The paper cites the protein vectors in Alshahrani,M. et al. (2017). Did you use exactly the same vectors by Alshahrani,M. et al. (2017)? In this paper Alshahrani,M. et al. (2017), there 6 other databa…
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* **PTHR ID & PTN node:**
GO:0004042 | acetyl-CoA:L-glutamate N-acetyltransferase activity | IBA with S000004666 , PTN000559455
* **Sequences with problematic annotation (ID + gene/protein nam…
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Dear all,
The proposal has been made to obsolete GO:0035304 regulation of protein dephosphorylation, and its descendants.
see https://github.com/geneontology/go-ontology/issues/28499.
Experime…
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Hi,
I would like to generate versions of existing proteins with your tool that are lacking one amino acid in their sequence (using alphabet of 19 amino acids). Do you think it is possible when gene…
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Hello,
I'm interested in using MutComputeX to generate scoring matrices for several custom design structures. How can I generate the serialized microenvironments and snapshots needed for model inpu…
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The widget has to be added in the following places:
- [ ] Predicted pockets widget in the Target prioritisation factors view for disease
- [ ] A new widget in the target profile page
The requir…
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In 1.5 we had all mappings of Chembl targets to Chembl target components (and then to uniprot) in the default lens, regardless if it is a single protein or a complex or a family. With the IMS reload, …
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The current version of MoleculeNet has the PDBBind Protein-ligand collection benchmarked. It would be nice to add the Protein-Protein PDBBind collection and the Protein-Nucleic Acid collections (also …
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while running protein_process.py, I am facing an issue inside the Protein_graph_process(dataset, fold, dir_output, id_train, id_test) function.
I did not find any code which helps to generate pocket_…