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Hi @oushujun,
I have been running the EDTA pipeline on several mollusc genomes to compare repeat content between species. My primary focus has been on examining how LTR content differs between prev…
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Whether hg19.fa.out.bed is needed be change?
When I run the cscMap, I got follow error.
Error: unable to open file or unable to determine types for file /thinker/storage/user/gaowy2/pipline/cscMap/…
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> I would like to better understand the plan for representing repeat data. The current situation is a little confusing to me; e.g. we have repeat fastas under both GENUS/repeats and hypogaea/repeats b…
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Hi @GallVp and @jasonshiller, The output of RepeatMasker can be used for visualization and other applications. Can we please keep the results in final/ if genepao/pangene runs this step? Thank you.
…
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Thank you for your helpful [pipeline](https://github.com/SIWLab/Lab_Info/wiki/Ageing-LTR-insertions) about aging LTR insertions.
But the [scripts](https://github.com/tvkent/BMap/blob/master/Script…
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Dear everyone.
I try to run RepeatModeler with Singularity.
_(#!/bin/bash
#SBATCH --time=48:00:00 # hh:mm:ss
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=64
#SBATCH --mem-per-cpu=4000 # megaby…
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Hello @rmhubley,
I am attempting to run RepeatModeler v.2.0.1 using the following command:
```
RepeatModeler -database merged_Eper_10x-nanopore_arcs_qm -pa 20 -LTRStruct
```
Unfortunately, I …
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Hi,
I am trying to use RepeatModeler-2.0.1, installed with dependencies:
```
RepeatModeler Version 2.0.1
===========================
Search Engine = rmblast 2.10.0+
Dependencies: TRF 4.10, REC…
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Move it to something like Naturalis/puppet-MAKER, test it.
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陈老师 您好！
关于geta重复序列在注释当中，trf的注释向您请教一下。我试过哺乳动物的几个注释，应该是有不到10%的trf是属于trf的序列，geta当中是不是可以将这部分添加进去？