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Hi @GMOD team,
The fields of epigenetics and now epitranscriptomics have evolved very fast in recent years and there are now a few DNA and RNA modifications which can be detected at single molecule…
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Hi Rhett,
I managed to successfully install _cortar_ by first installing R version 4.1.3 compiled for Intel (rather than Arm64, which wouldn't work - I have Apple Silicon). Just for reference, I ha…
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Hi,
I am trying to validate whether I have TOBIAS working. Are there test output files / figures for the test data that can be used to validate whether my code is working?
Niko
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Hey thanks for the package. I was reading the dictys paper on bioarxiv and it says
To reconstruct a context specific GRN for each group of cells, Dictys first infers TF binding sites in regulato…
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Hi there. Thank you for the nice tool.
I tried to run version 1.0.1 on an independent dataset following your tutorial, but got the error below. How can I solve that please?
```
> # Combining ht…
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Hi
I downloaded the tool and installed it following your instructions, including MEME, which is installed in my home directory. I get the following error when CUT-RUN-Tools runs MEME:
[](url)I get a…
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https://mp.weixin.qq.com/s/iawtsDsw2U1Cfywj2e0cHw
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Hi,
I'm having issues with the MEME analysis for de novo motif finding.
Could you help me with what the issue is?
Thanks for the amazing tool!
[slurm-97220.out.txt](https://github.com/fl-yu/CUT-…
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Hello,
At UMCCR, we use arriba as a fusion caller for WTS clinical samples for cancer patients. Arriba is part of our WTS production pipeline setup and works great.
We have recently encountered …