-
Hi, I'm trying to run tsne similar to the exmample code you provided but I'm getting this error which I'm not sure why is happening:
`t_sne_result = tsne_bhcuda.t_sne(samples=X, use_scikit=False, fil…
-
- [x] 1. Use Gensim to train word embeddings (why can't we just use pre-trained word embeddings? Maybe we ask Wei if we can just use pretrained word2vec)
- [ ] 2. Take individual job descriptions for…
-
, starting out from the UMI file on GSE database? (GSE115469_Data.csv)
If I make an object GSE11546…
-
Hello Rongxin,
I just made a t-SNE plot(Figure1) and want to see what does UMAP look like. But in this case, the UMAP plot(Figure2) looks very weird. Are there any other things I need to make chan…
-
**Is your feature request related to a problem? Please describe.**
Yes. Currently, TSNE and UMAP do not actually allow for a precomputed distance matrix to be used. This is despite there being argume…
-
Hi,
thank you for this useful package.
Can you suggest how to generate UMAP or tSNE from a`reverseDecon`object?
Thanks
-
FEATURE REQUEST:
In https://github.com/CannyLab/tsne-cuda/issues/8, the possibility of using a custom NN matrix is discussed and noted to be 'easy' to implement.
DavidMChan: " It would be easy to …
-
Currently, the error "Error in readRDS(tSNE_fileName) : bad 'file' argument" in the runSCENIC_3_scoreCells function seems to be occurring to other users as well. Has this part been resolved??
If it…
-
Hello,
I am trying to run fast_tsne.py in Google Colab due to inadequity of my system. When I tried to run the code I am getting the error below:
FileNotFoundError: [Errno 2] No such file or dir…