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Requesting a new module for bcftools vcfstats output. Started to add data to the TestData repo and saw someone already did that a couple weeks ago, so I'll just submit this new issue as an up vote fo…
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```
$ make install
gcc -rdynamic -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o…
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a la https://stackoverflow.com/questions/29534519/why-gcc-doesnt-recognize-rdynamic-option
```
make all | grep bcftools
cd bcftools && /Applications/Xcode.app/Contents/Developer/usr/bin/make
gcc -rd…
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Hi Everyone,
I am using bcftool-1.3.x and trying to plot the variant statistics from chk file
plot-vcfstats VQSR_snp99.0_raw_indel_QJ_12SAMPLE.vcf.vchk -p /share_bio/unisvx3/zengchq_group/sohail/_TI…
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When running make on the cloned develop branch of bcftools, the following error occurs:
gcc -rdynamic -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o fil…
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Select gene PDHA1 on spiked in platinum wgs variants for training session. The following errors are produced in the snpEff error log:
Mar 11 16:53:30 ip-172-32-45-253.ec2.internal docker[5307]: Erro…
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The new version of bcftools (not the one installed, but freely available: http://www.htslib.org) includes a script that authomatically generates some plots that can be very useful to assess the qualit…
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Hi,
I am using the current vcflib (downloaded on 2015/04/16) compiled in CentOS7
( CentOS Linux release 7.1.1503, kernel 3.10.0-229.1.2.el7.x86_64)
When I try to run vcfstats on a vcf file generated…
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Hello, I'm writing to ask if this lib should support version 4.1 VCF files because I'm trying various tools on a file (gotten from the GEUVADIS consortium) and I encounter different kind of errors (th…
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`vcffilter -f "DP >= 10" file.vcf` segfaults.
I understand that >= operator is not supported (only >) but segfault is not desirable.