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If I have files output from AA and AC, is there a way for me to experiment with the cycle view /genome browser to investigate potential larger structures formed from my cycles/paths? Would be good if …
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Bigger milestone to start as separate repo but version of pipeline to support minion and pacbio with test data for both
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Hi there,
I am trying to download the plant portion of the EMBL database. I left the download running overnight because it's so large, it takes a long time. It failed because I ran out of space on m…
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We have examples where there is a choice of two primers for the end of a given amplicon. Only one primer of the two primers has support from the reads.
Observed behaviour: Both primers are kept, in…
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**Describe the bug**
I'm working with SARS-CoV-2. I only want to incorporate indels into a variant call file with `ivar variants` and consensus genome generated with `ivar consensus` when a certain f…
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'Omics terms can be difficult to learn. Having them described in a single page may help new comers to overcome this barrier quickly and transfer knowhow that may be a pain to transfer through more for…
meren updated
2 years ago
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I have some sets of dual indexed fungal ITS amplicon pools from specimens. One is 288 specimens and the other is 480 specimens if they would be helpful at all in developing methods.
Could also dis…
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I'll use this issue to document steps to build a `k=31,scaled=1000` index for SRA metagenomes. This is the same process used for the current `k=21,scaled=1000` index in branchwater.sourmash.bio, but c…
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### Description of feature
Context in [this Tweet](https://twitter.com/nilshomer/status/1498528699670433795?s=20&t=1uKZpUz-ZkBQKuCobNvyGQ). Used by @peterk87 @fmaguire in [this pre-print](https://www…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue …