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iqbal-lab-org
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viridian
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Documentation question
#114
iqbal-lab
closed
3 weeks ago
2
Support amplicon schemes in artic bed format
#113
martinghunt
closed
3 months ago
1
Bug fix no score ratio when only one scheme
#112
martinghunt
closed
5 months ago
0
Automatic amplicon scheme selection always fails when only one scheme is available
#111
bede
closed
5 months ago
1
Add task dl_and_run; rename ena options
#110
martinghunt
closed
6 months ago
0
ENA fixes
#109
martinghunt
closed
6 months ago
0
--ena_run causes crash unless --tech also used
#108
martinghunt
closed
6 months ago
0
Illumina unpaired
#107
martinghunt
closed
1 year ago
0
Rename repository to "viridian"
#106
martinghunt
opened
1 year ago
0
Refactor 2023
#105
martinghunt
closed
1 year ago
0
Test pipeline is deterministic
#104
martinghunt
closed
1 year ago
0
More informative error messages for assembly failures
#103
bede
opened
1 year ago
0
Consistent use of primers throughout pipeline
#102
martinghunt
closed
1 year ago
6
Handling adapter sequences
#101
martinghunt
opened
1 year ago
9
Primers contributing to Clean.Tot.cons
#100
martinghunt
opened
1 year ago
7
Deciding when to exclude primers
#99
martinghunt
opened
1 year ago
15
Fix varifier options sanitise_truth_gaps,hp_min_fix_length
#98
martinghunt
closed
2 years ago
0
Version string in refactor_2022
#97
jeff-k
opened
2 years ago
0
Refactor 2022
#96
jeff-k
closed
2 years ago
0
Singularity build failing
#95
martinghunt
opened
2 years ago
4
Update JSON with summary block/new info while preserving tags used by GPAS
#94
iqbal-lab
opened
2 years ago
2
VCF mods
#93
iqbal-lab
opened
2 years ago
0
Format changes/cleanup of the TSV file
#92
iqbal-lab
closed
2 years ago
14
errors in installation.
#91
hafizmtalha
opened
2 years ago
1
Scheme detection fails depending on read order
#90
bede
closed
2 years ago
9
Output of tsv as commandline option
#89
iqbal-lab
closed
2 years ago
1
Enumerate what is happening in the extra indel errors in validation set
#88
iqbal-lab
opened
2 years ago
0
If users want to force scheme, let them
#87
iqbal-lab
closed
2 years ago
5
Consensus filename should match the README and 0.3.7
#86
iqbal-lab
closed
2 years ago
3
Delete temp files by default
#85
iqbal-lab
opened
2 years ago
0
keep-bam option should make a coord sorted indexed bam not name-sorted
#84
iqbal-lab
opened
2 years ago
0
JSON log - multiple small things
#83
iqbal-lab
opened
2 years ago
0
Cuckoo mode as a command-line option
#82
iqbal-lab
closed
2 years ago
14
Compare two primer/amplicon filter options
#81
iqbal-lab
closed
2 years ago
9
Homopolymer filter for nanopore data
#80
iqbal-lab
closed
2 years ago
1
Immediate issues to be combined into new tag for testing
#79
iqbal-lab
closed
2 years ago
4
Cope gracefully if passed empty fastq
#78
iqbal-lab
opened
2 years ago
0
Suitability of 'Sydney' scheme for autodetection
#77
bede
closed
2 years ago
3
Add artic v4.1, hide artic v4 from user
#76
martinghunt
closed
2 years ago
0
Refactor 2022
#75
jeff-k
closed
2 years ago
0
Ampliseq digests primers
#74
iqbal-lab
opened
2 years ago
0
Known issues with ARTIC3 in vocs
#73
iqbal-lab
closed
2 years ago
0
Arm builds and cylon
#72
martinghunt
closed
2 years ago
0
Coordinate 22227 worth evaluating carefully
#71
iqbal-lab
closed
2 years ago
1
Worse/noiser performance with nanopore at Orf7a:82
#70
iqbal-lab
closed
2 years ago
1
Spike 215 looking odd in both illumina and nanopore
#69
iqbal-lab
closed
2 years ago
1
Good example at nt241
#68
iqbal-lab
closed
2 years ago
2
Not quite perfectly clean at nt210
#67
iqbal-lab
closed
2 years ago
1
Anomalies at M155
#66
iqbal-lab
closed
2 years ago
1
M82 is a mess for everyone
#65
iqbal-lab
closed
2 years ago
1
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