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**Is your feature request related to a problem? Please describe.**
It's annoying when running a pipeline in Test Mode when CellProfiler breezes right past your pause because the module is unchecked.
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Link to the pipeline and example data
https://drive.google.com/drive/folders/1l2w_RMn3fm9fr_9zwSYHKmxGQFy6KOB3?usp=share_link
This image suggests the metadata extraction from file works
Ho…
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When trying to use the `count_cells` function within the [cells.py](https://github.com/cytomining/pycytominer/blob/b2c6cc4580cf9e1c040a7370b99976916a22e756/pycytominer/cyto_utils/cells.py#L305) file, …
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From CP TODO:# Dlogan 2008_07_25 Look into adding Fractal dimension metrics to MeasureAreaShape. See [http://cellprofiler.org/forum/viewtopic.php?f=4&t=445this Forum post] for a discussion.
Orig…
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**Describe the bug**
I encountered a very strange BUG in the process of using cellprofiler. After I wrote the pipeline, I used the Test mode model to find that the program could run normally and the…
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This issue documents all the changes needed to be made to improve this repository (including issue #12):
1. As described in issue #12, the repository will need to be renamed to `pyroptosis_signatur…
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- OS: Windows 10
- CellProfiler Version 4.1.2
- Installed from source (cloned)
- Python 3.10
I installed Cellprofiler from source
Of note: for the installation to work I had to change som…
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So it's been two entire work days and I'm still very frustrated that it won't install properly. Maybe I'm doing something wrong, maybe there isn't enough documentation about how to properly install.
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Many people have good reasons to want to set CellProfiler up so that it will "listen" for an image - for instance to process any image dumped in a directory with a particular pipeline. The temptation …