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Hi,
I have an issue that I suspect may be related to the recently fixed error (https://github.com/GreenleafLab/ArchR/issues/395) in saving tile matrices when there is no coverage (short scaffold). …
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No matter which junction I click on in Gene_View, when I click on the Junction_View tab I get the pop-up error "Cannot retrieve genomic information for this gene". Below the load database button in Se…
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Hi,
I have just installed homopolish and was trying to run it on assemblies of a set of _Polaromonas_ isolates, but I keep getting the 'less than 5 closely-related genomes' error message and I don't…
Dwrgi updated
2 years ago
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Hi!
I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command:
platon contigs.fasta --db ~/Databases/db --output platon_accu --mode accura…
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Hi,
I tried several times to perform BP reactions with the Recombination Assembler tool of version v3.1.6, July 10, 2024 on Windows but each time the tool puts my plasmid in the "insert" part inste…
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We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
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```ini
P2 = "foo[-P1] => bar" # (sequence P2, with erroneous P1 offset)
```
^ this fails validation in both 7 and 8 with *no cycling sequences defined for foo*
But this:
```ini
P2 = """
f…
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During the VRS call on Feb 8, 2021, the limitations of the current model were discussed with regard to support for circular sequences (e.g., mitochondrial chromosome). The decision was made to add an…
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Goal: I hope to learn how to use large data sets to do different types of computational analysis.