hackseq 2016_project_6 issues - Githubissues

hackseq / 2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data

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Make a reference Y chromosome for realignment

#14 mathbionerd opened 7 years ago
0
Allele Balance

#13 ekarlins opened 7 years ago
0
1000 genomes SV calls

#12 whitneywhitford closed 7 years ago
3
DGV

#11 whitneywhitford closed 7 years ago
3
Call variants on X and Y

#10 mathbionerd opened 7 years ago
5
Glossary

#9 whitneywhitford closed 7 years ago
4
Realign 1000G data to GRCh38

#8 BrunoGrandePhD opened 7 years ago
13
Run LASTZ on all possible combinations of chromosomes X and Y

#7 BrunoGrandePhD opened 7 years ago
19
Create conda environment

#6 BrunoGrandePhD closed 7 years ago
2
Identify high confidence SNPs across X and Y

#5 Phillip-a-richmond closed 7 years ago
2
Download datasets from 1000G project

#4 BrunoGrandePhD closed 7 years ago
10
Plot read mapping quality along chromosome X and Y

#3 BrunoGrandePhD opened 7 years ago
2
Reading current methods

#2 mathbionerd opened 7 years ago
17
Welcome

#1 mathbionerd closed 7 years ago
5