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### Project short name: Jiang_X
### Primary Wrangler: @anu-shiva
### Secondary Wrangler:
### Associated files
* [Google Drive](https://drive.google.com/drive/folders/10fYwxP5ls45BecvFvpUCCGTOF…
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Hi, I am trying to identify the syntenic pattern. I have three genomes to compare one is diploid A (2x), B- hexaploid(6x) and C- allododecaploid (12x). The results I am getting A-B (1:4) instead of 1…
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Dear,
I find the ANCOM-BC approach to identify deferentially abundant taxa very interesting and was wondering if the estimated sample-specific offset term could be replaced by a known sampling frac…
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It is an old topic ... with very many previous discussions, but I just wanted to bring it back to the discussion table.
My understanding is that the current data model is built around the central c…
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Hi @mikejiang & @jacobpwagner ,
I am having trouble setting factor levels of pData variables using the latest flowWorkspace. I used to be able to do this:
```{r,}
pData(gs)$Treatment [1] "A" "B"…
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Hi Thom,
I remember listening to your bioformatics chat podcast (https://bioinformatics.chat/propr) a while back and recently dove into the literature on several compositional data analysis reviews/…
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Hi,
probably a very simple issue to fix but I am strugling to solve:
I have a txt numeric table with column header.
identical(
data.table::fread(fileName,sep='\t',header = T,check.names = F,…
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## User story
>As a curator
>I want the post uploadscript to work as expected
>So that I can use it
## Acceptance criteria
>Given I have uploaded a dataset using the upload script
>Whe…
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Dear authors,
First of all, thank you very much for your great work on Seurat!
I would like to use Seurat for analyzing data coming from a Spectral Flow experiment (more than 10 million cells, 40 …
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Hi, I have another question. When reducing the batch effect of the flow cytometry data, can I also include unstained control in batch correction? If no, which reference group should I use to gate the …