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This is for relevant to what is being worked on (like the JSON parser issue #156) but also some OT things. The purpose of this is to hopefully make it a little bit easier to find more relevant informa…
xexyl updated
3 months ago
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https://github.com/alingse/go-linter-runner/blob/main/jobs/testifylint.yaml
```
name: testifylint
linter: testifylint
workdir: .
install: go install github.com/Antonboom/testifylint@latest
inc…
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`polish_carveme` sets units for all parameters to mmol_per_gDW_per_hr which is in accordance with the standard understanding of the results of Flux Balance Analysis. However the listOfUnitDefinitions …
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#### Problem description
Please explain:
I need a list of reactions either producing or consuming a metabolite
I tried getting a frozenset of reactions
model.metabolites.get_by_id("atp_c").react…
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**Submitting author:** @ym2877 (Yoli Meydan)
**Repository:** https://github.com/korem-lab/pymgpipe
**Branch with paper.md** (empty if default branch): joss-paper
**Version:** v0.15.0
**Editor:** @fboe…
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Make all the args/kwargs consisten, e.g. `change_constraint(...; lb=..., ub=...)` vs `change_bound(....; lower=..., upper=...)`
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**Submitting author:** @sportiellomike (Mike Sportiello)
**Repository:** https://github.com/sportiellomike/fluximplied
**Branch with paper.md** (empty if default branch):
**Version:** v.0.2.0
**Edito…
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Solving a pFBA model that does not admit an LP solution in its first stage causes an error:
```julia
julia> ecoli_sol = parsimonious_flux_balance_analysis_dict(
e…
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### Steps to reproduce
1. Start a chat with someone new
2. type message
3. press enter
### Outcome
#### What did you expect?
Message sent
#### What happened instead?
'Some of your messages c…
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A model made by removing reactions from iML1515 and then gapfilled from iML1515 to do the reaction
```julia
Dict("atp_c"=>-1,
"adp_c"=>1,
"pi_c"=>1,
"h2o_c"=>-1,
"h_c"=>1)
```
doesn't give a …