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Hi, I am using epic2 for my E.coli ChIP-seq data, But it runs with hg19 genome as default, so I used custom genome fasta file which is in the same folder as the data. I am using this following com…
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# Association
- [ ] [A simple, consistent estimator of heritability for genome-wide association studies]( https://www.biorxiv.org/content/biorxiv/early/2017/10/17/204446.full.pdf)
- [x] [Multivari…
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Hi rMATS team,
I wanted to discuss a discrepancy I've encountered between the results obtained from rMATS-turbo analysis and what I observed in the Integrated Genome Viewer (IGV) while examining RNA-…
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Dear authors,
Thank you for providing a great tool to make fast ChIPseq analysis.
I was making the analysis using parameters to include spike-in normalization:
churros -p 24 /home/ubuntu/input/sa…
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Genome repetitiveness calculation during genome install is unnecessary. The calculation was for investigational purposes early on in the process of writing YMAP. It was subsequently found to not be a …
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Hi,
I had a very weird bug when scanning TF binding motifs.
I followed the instructions from the [notebook](https://github.com/morris-lab/CellOracle/blob/master/docs/notebooks/02_motif_scan/02…
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```
> MYC_cn_expression
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I'm trying to build [GATK](https://github.com/broadgsa/gatk-protected) using JitPack. If I clone the repository and run `mvn verify` in the directory, I get a successful build. However, if I try to bu…
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Hi,
I wonder if it's possible to start the analysis using reads for which those that map to the human genome are removed. For instance the unmapped output from STAR aligner using the human genome.
…