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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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* Name of dataset: Brain Tumor Segmentation Data
* URL of dataset: [https://ieee-dataport.org/competitions/brats-miccai-brain-tumor-dataset]
* Citation: [1] B. H. Menze, A. Jakab, S. Bauer, J. Kalpa…
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Hi,
I would like to use RSEM to quantify some nuclei RNA-seq data.
STAR version=2.7.9a
RSEM version=1.3.3
The code I used are:
###generate rsem reference
#use GRCm38_102 genome and gtf …
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Hi,
I compared the results that I obtained using vibrant contigs before and after running phamb using checkv
Before
|checkv_quality |n| mean |sum |max|
|---|---|---|---|---|
|Complete |557 |46…
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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
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Hi team,
As we know that funannoate runs with multiple cpus, but a lot of steps in between runs in parallel. A lot of times it gives memory related errors.
Can someone recommend the correct slur…
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Hi szpiech,
Thank you for your tool. I have a question about it.
The map file is needed in the calculation of iHS. The genetic position of the rsID is required in the map file, but the SHA…
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Hi,when I tried mecat to assemble PacBio reads. The same problem happened again.
The mecat version which I used is v1.2. And the command is as follows.
```
date
mecat2pw -j 0 -d 00.data/Emu_F_Pac…
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In Stingray, we build documentation from a bunch of rst files and a number of notebooks. It usually works quite well, but today I'm having errors like the ones in the build below:
https://github.co…
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Hi,
In the "promoters_seq_example.bed" file, what is the 4th and 5th column?
I assume 1st-3rd column is "chr", "start", "end" and the 6th is "strand"
I was trying to use my own bed file with on…