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I have been trying to make the RDPtools, however I keep running into make issues. I am following the instructions on the README file, I am making using super user prevligies (SU). Below is the output.…
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Running make.. works till the mentioned file is tried to download.
jar:
[echo] To run this application from the command line without Ant, try:
[echo] java -jar "/home/clevergene/swdump/RDPT…
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Reorganization of Response and Detection Terms
This proposal grows out of the GO Content Meeting
discussion of the Sourceforge item "Pathogenic Terms"
(1013068, now closed), taking into account som…
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Hi I'm getting the following error:
``` bash
cmd-> java -Xmx16g -jar /bio_bin/rdp_classifier_2.10.1/dist/classifier.jar merge-detail \
> -o combined_rdp.txt -h combined_hierarchy.txt -c 0.5 --gene fu…
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We decided that this shouldn't be language-specific (i.e., no _py_ in the name) and shouldn't be problem specific (e.g., QIIME implies microbial ecology).
It would be great to put all of the project…
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Good's Coverage estimate using Qiime
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@jrrideout and I were just discussing metadata objects. A good home would be here in biom. Two possible packages that we know of that would make sense:
- [tablib](https://github.com/kennethreitz/tabli…
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This is not an issue per se, but just an entry to provide context for the following commit:
https://github.com/citation-style-language/styles/commit/36eb37bb43c22879613f1312d8041dac42d72607.
Here is …
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Hello,
I imported a biom file created in QIIME, with taxonomy assigned using GAST. The taxonomy is not formatted as in green genes, and looks like this:
```
{"id": "38345", "metadata": {"taxonomy": …
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Add mouseover definitions for technical terms:
- [x] OTU
- [x] beta diversity
- [x] alpha diversity
- [x] ordination
@gregcaporaso will add definitions here, and @jrrideout will add the mouseover fu…