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Hello @hoelzer
I have executed a test run which has been doing great. However, when running on the machine,I have some problems.
Please see the following for the entire result shown in the shell.
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Following up on https://github.com/ga4gh/dockstore/issues/1049
Let's make sure that tool registry schema is compatible with Singularity, in particular I think this means the following although @vsoch…
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@dmbala has been working on getting riboviz working on Amarel (details for the computing environment: https://oarc.rutgers.edu/resources/amarel/). We are getting the following error:
```
Error: '…
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I do not know if this might be something a bit against the general data flow philosophy, but I wonder if it might be interesting to have some kind of detached / background processes that would only en…
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Hello sarek maintainers,
I'm trying to run snpEff (sarek v2.7.1, Nextflow v21.04.3) on mouse WGS data aligned to the GRCm38 reference. I saw in another issue reported here that snpEff this referenc…
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## Bug report
I would like to use something like : `nextflow run -hub gitlab auragen/dev/pipelines/testlab-nf ...` to run private nextflow repo `testlab-nf`.
First I can actually run it success…
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I have the below error when run the test command in conda for first time. I try installing SortMeRNA to my conda environment thinking it would install this too and bypass problem but I still can't fin…
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The following procedure should be added in the documention for running execution workflows:
1. Check if tool already available as a [Docker](https://www.docker.com/) container. Check e.g.
- http…
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The JobGenerator business works for LSF but we are starting to encounter maintainability issues already -- it appears that when a large number of jobs are scheduled, especially if they need to access …
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## Bug report
Upon trying to pull a private container from docker-hub on Azure Batch, using the `v21.05.0-edge` release, the pipeline fails with the following error message
```
Caused by:
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