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nadeemlab
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SPT
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://oncopathtk.org
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Too many null values in computed metrics
#348
jimmymathews
opened
3 days ago
0
Fold findings endpoint into study summary
#347
jimmymathews
opened
1 week ago
0
Fix MIME type header for importance-fraction-plot endpoint
#346
franciscouzo
closed
1 week ago
1
Add nonblocking counts endpoint
#345
jimmymathews
closed
2 weeks ago
1
Counts endpoint meant for polling
#344
jimmymathews
closed
2 weeks ago
0
Refine Ripley metric extraction
#343
jimmymathews
closed
2 weeks ago
0
Fix Ripley metric
#342
jimmymathews
closed
2 weeks ago
0
Intermittent bug fixes
#341
jimmymathews
closed
2 weeks ago
2
Speed up with C extensions
#340
jimmymathews
opened
2 weeks ago
0
Infinite loop checking for completed metric
#339
jimmymathews
closed
2 weeks ago
2
Vectorize operations on CellDataArrays
#338
CarlinLiao
closed
2 weeks ago
11
Operations over cell data arrays can be vectorized
#337
CarlinLiao
closed
2 weeks ago
3
Partial caching
#336
jimmymathews
opened
1 month ago
0
Fix feature duplication bug
#335
jimmymathews
closed
1 month ago
1
Cache GNN plots
#334
jimmymathews
closed
1 month ago
0
Cache GNN plot
#333
jimmymathews
closed
1 month ago
0
Findings URLs
#332
jimmymathews
closed
1 month ago
1
Single-sample computation timeout
#331
jimmymathews
closed
2 weeks ago
0
Feature identifier collision
#330
jimmymathews
closed
1 month ago
0
Bug fix key conflict
#329
jimmymathews
closed
1 month ago
0
Remove unnecessary identifiers, causing concurrency conflicts
#328
jimmymathews
closed
1 month ago
0
Parallelization refactor
#327
jimmymathews
closed
1 month ago
0
Make ondemand services parallelizable
#326
jimmymathews
closed
1 month ago
2
Move plugin repos into this main repo
#325
CarlinLiao
closed
1 month ago
3
Issue314
#324
jimmymathews
closed
2 months ago
0
Consolidating by bringing in spt plugin repository contents
#323
jimmymathews
closed
1 month ago
0
Library dependency updates
#322
jimmymathews
closed
2 months ago
3
Reduce memory footprint with an optimization in cache checking
#321
jimmymathews
closed
2 months ago
0
Make GNN plots available as an SPT CLI command and API endpoint
#320
CarlinLiao
closed
3 months ago
9
Make GNN plots available as an SPT CLI command and API endpoint
#319
CarlinLiao
closed
3 months ago
7
Implement a refresh signal for the ondemand containers
#318
jimmymathews
closed
1 month ago
2
Support normalized case for study names
#317
jimmymathews
opened
3 months ago
1
Study sets
#316
jimmymathews
closed
3 months ago
0
Implement cell limit for cells data query
#315
jimmymathews
closed
3 months ago
0
Stalled backend for large cell data payloads
#314
jimmymathews
closed
2 months ago
2
scverse ecosystem-package and ADI/SpatialData conversion
#313
sanadeem
opened
3 months ago
0
Study sets
#312
jimmymathews
closed
3 months ago
0
Update reanalysis scripts
#311
jimmymathews
closed
4 months ago
0
More study detail from API service
#310
jimmymathews
closed
5 months ago
0
Additional study details
#309
jimmymathews
closed
5 months ago
1
Failing metric fails to cancel
#308
jimmymathews
closed
1 month ago
2
add graph plugin plot code
#307
CarlinLiao
closed
3 months ago
14
Add graph plugin heatmaps
#306
CarlinLiao
closed
3 months ago
0
Pin workflow image tag default to current SPT version
#305
CarlinLiao
closed
4 months ago
3
Upload importance should be generated procedurally in Nextflow workflows
#304
CarlinLiao
opened
5 months ago
0
SPT image version isn't pinned
#303
CarlinLiao
closed
2 months ago
1
Implements sorting by default on most endpoints
#302
jimmymathews
closed
5 months ago
0
Include utility for feature deletion
#301
jimmymathews
closed
5 months ago
0
Utility to delete one feature
#300
jimmymathews
closed
5 months ago
1
Implement cell-level api endpoint
#299
jimmymathews
closed
5 months ago
0
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