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nadeemlab
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SPT
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://oncopathtk.org
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Feature identifier collision
#330
jimmymathews
closed
4 months ago
0
Bug fix key conflict
#329
jimmymathews
closed
5 months ago
0
Remove unnecessary identifiers, causing concurrency conflicts
#328
jimmymathews
closed
5 months ago
0
Parallelization refactor
#327
jimmymathews
closed
5 months ago
0
Make ondemand services parallelizable
#326
jimmymathews
closed
5 months ago
2
Move plugin repos into this main repo
#325
CarlinLiao
closed
5 months ago
3
Issue314
#324
jimmymathews
closed
5 months ago
0
Consolidating by bringing in spt plugin repository contents
#323
jimmymathews
closed
5 months ago
0
Library dependency updates
#322
jimmymathews
closed
5 months ago
3
Reduce memory footprint with an optimization in cache checking
#321
jimmymathews
closed
5 months ago
0
Make GNN plots available as an SPT CLI command and API endpoint
#320
CarlinLiao
closed
6 months ago
9
Make GNN plots available as an SPT CLI command and API endpoint
#319
CarlinLiao
closed
6 months ago
7
Implement a refresh signal for the ondemand containers
#318
jimmymathews
closed
5 months ago
2
Support normalized case for study names
#317
jimmymathews
closed
1 month ago
1
Study sets
#316
jimmymathews
closed
6 months ago
0
Implement cell limit for cells data query
#315
jimmymathews
closed
6 months ago
0
Stalled backend for large cell data payloads
#314
jimmymathews
closed
5 months ago
2
scverse ecosystem-package and ADI/SpatialData conversion
#313
sanadeem
opened
7 months ago
0
Study sets
#312
jimmymathews
closed
6 months ago
0
Update reanalysis scripts
#311
jimmymathews
closed
8 months ago
0
More study detail from API service
#310
jimmymathews
closed
8 months ago
0
Additional study details
#309
jimmymathews
closed
8 months ago
1
Failing metric fails to cancel
#308
jimmymathews
closed
5 months ago
2
add graph plugin plot code
#307
CarlinLiao
closed
7 months ago
14
Add graph plugin heatmaps
#306
CarlinLiao
closed
7 months ago
0
Pin workflow image tag default to current SPT version
#305
CarlinLiao
closed
8 months ago
3
Upload importance should be generated procedurally in Nextflow workflows
#304
CarlinLiao
opened
8 months ago
0
SPT image version isn't pinned
#303
CarlinLiao
closed
5 months ago
1
Implements sorting by default on most endpoints
#302
jimmymathews
closed
8 months ago
0
Include utility for feature deletion
#301
jimmymathews
closed
8 months ago
0
Utility to delete one feature
#300
jimmymathews
closed
8 months ago
1
Implement cell-level api endpoint
#299
jimmymathews
closed
8 months ago
0
Cell level data
#298
jimmymathews
closed
8 months ago
5
add new specifiers to DataAccessor importance
#297
CarlinLiao
closed
8 months ago
0
Analysis replication DataAccessor is missing new importance score specifiers
#296
CarlinLiao
closed
8 months ago
0
Counts files to db migration
#295
wooferclaw
closed
9 months ago
4
Quick patch to counts_by_signature to handle if one of positive or negative is empty
#294
CarlinLiao
closed
9 months ago
1
`DataAccessor.counts_by_signature` fails if either no positive or no negative markers are provided
#293
CarlinLiao
closed
9 months ago
0
Add support for graph-transformer plugin
#292
CarlinLiao
closed
9 months ago
7
Modularize workflow Nextflow files
#291
CarlinLiao
closed
9 months ago
0
Balance graph datasets
#290
CarlinLiao
opened
10 months ago
0
Modularize graphs workflow
#289
CarlinLiao
closed
9 months ago
0
prevent package caching in Docker images
#288
CarlinLiao
closed
10 months ago
1
Make `spt workflow configure` support both Docker and Singularity
#287
CarlinLiao
closed
10 months ago
20
Expand workflow configure support for singularity
#286
CarlinLiao
closed
10 months ago
1
No option to show Nextflow logs when running the test suite
#285
CarlinLiao
closed
2 months ago
4
Allow saved graphs to be readable without importing spatialprofilingtoolbox
#284
CarlinLiao
closed
10 months ago
1
Convert cggnn/graphs and workflow configure to use config files (redo)
#283
CarlinLiao
closed
10 months ago
17
Dockerize `spt cggnn train` (redo)
#282
CarlinLiao
closed
10 months ago
1
Convert cggnn/graphs and workflow configure to use config files
#281
CarlinLiao
closed
10 months ago
8
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