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Hi Jason!
Im running wgfast with 3 inputs as required; a reference.fasta reference sequence (in the reference dir) and a bestsnps.tsv marix (from nasp also in the reference dir) and paired reads f…
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Accurate phylogenetic placement relies on good alignment of both the reference sequences used to build the tree, and the query sequences to be inserted. We can help on the reference tree side of thing…
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We need to revamp the phylogeny of the D-genome, minimally for ancestral state reconstructions. Introgression among members of the D-genome and with other cottons complicate this, mostly for G. gossy…
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When entering a simple text sequence (non-FASTA format), such as AAAACCCCTTTTGGGG, the sequence simply disappears when you try to enter an e-mail address, without any error or warning being presented …
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Hi Stephen,
I want to change the representative genome used for calling SNPs for one of the species. I just wanted to confirm that the only two files that need to be updated using info from PATRIC …
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Hi,
I would like to ask in case of some genomes that we have been analyzed (assembled Illumina sequencing), the contamination percentage is over 100% or even 200%. What does it really mean in those…
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Hi,
I have a very large 16S dataset, and I was wondering if there is an option to use PAPRICA only with unique 16S sequences to speed up the alignment step in the beginning? If I understand the logs …
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Dear Jennifer and ghost-tree team,
Is it possible to perform a phylogenetic placement of sequences on a ghost-tree (e.g., with [pplacer](http://matsen.fhcrc.org/pplacer/), [EPA](https://github.com/zha…
vmikk updated
7 years ago
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This paper proposes a revised classification of Anemone s.l. and includes new combinations in the resurrected genus Anemonastrum Holub for taxa currently recognized (in VASCAN) as Anemone canadensis, …